Search Results for "correlation" - Page 6
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Showing 175 open source projects for "correlation"
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CorrelaDiff
Compares text files and shows correlation between lines.
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ArchTEx
Accurate Extraction and Visualization of Next-Generation Sequence data
Quick extraction and visualization of NGS Data. Allows for calculation of strand cross-correlation to identify optimal short-read tag extension. Allows for extraction of data using a variety of data transformations. Performs genome-genome correlation of BAM files to assist in comparison of biological and technical replicates. http://bioinformatics.oxfordjournals.org/content/early/2012/02/02/bioinformatics.bts063.abstract -
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Vigilo is a complete monitoring system designed for large environments thanks to a fully scalable and modular architecture. Built around Nagios, Vigilo integrates metrology graphs, map views, events correlation and reporting.
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MCPerm: Monte Carlo SNP permutation
Monte Carlo permutation method for SNP multiple test correlation
MCPerm: A Monte Carlo permutation method for multiple test correlation in case-control association study Traditional permutation (TradPerm) test is an important non-parametric analysis method which can be treated as the gold standard for multiple testing corrections in case-control association study. However, it relies on the original single nucleotide polymorphism (SNP) genotypes and phenotypes data to perform a large number of random shuffles, and thus it is computationally intensive, especially for genome-wide association study (GWAS). ... -
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FeatureSelection
Feature selection methods including correlation feature selection.
Small bundle of feature selection algorithms, most notably correlation feature selection (CFS by Mark A. Hall). Provides a light-weight interface and published under BSD license. -
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ACARM-ng
Network alert correlation framework.
ACARM-ng is an alert correlation software which can significantly facilitate analyses of a traffic in computer networks. It is responsible for collection and correlation alerts sent by network and host sensors also referred to as NIDS and HIDS respectively. Correlation process aims to reduce the total number of messages that need to be viewed by a system administrator to as few as possible by merging similar events into groups representing logical pieces of malicious activity. -
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BioNetwork Bench is a flexible interactive database querying system for storing and manipulating gene expression data and genetic networks, constructing networks from expression data and iteratively querying multiple networks and expression datasets.
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ShiVaSmiles
A slick interface to see various scale analysis algorithms in action.
The Shape Visualizer is intented to be an exploratory/educational tool making it quick and easy to see how various mathematical methods perform in analysing and selecting the various patterns present on an image. The main website is built as a wiki gathering info and examples on the various implemented algorithms. The combination of the application and its wiki intend to constitute a nice little pedagogic toolkit for multiscale analysis. Feel free to contribute code or wiki content ! -
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... * tblred: compute ("reduce") aggregations (e.g., sum, average) over groups defined by key columns. * tbldesc: Summarize columns in file (e.g., proportion of character/numeric values, min/mean/median/max, missing values, correlation with a target column). * tbljoin: Relational join without the need of pre-sorting and column matching. * ... See HostedApps/MediaWiki for examples.
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Signal And Noise Estimation Procedure Including Correlation (SANEPIC) has been originaly developped by G. Patanchon to be used on data from the Ballon-borne Large Aperture Submillimeter Telescope experiment (BLAST) . It has been modularized and generalized to other bolometer array by A. Beelen & M. Husson. SANEPIC has been applied with success to LABOCA and Herschel-SPIRE data.
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A Java simulation of a typical EPR experiment by creating "entangled" particles that are sent to two detectors A and B. After many such experiments the statistics are computed, including the CHSH value and also the correlation for each angle
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The esoteric goal of this project is to provide an asset management system that is the glue binding disparate information repositories across the enterprise. The heart of the project will be the correlation engine and open plugin structure.
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Nutrition Metrics is a food and nutrients intake system created to improve general human diet. Processes the USDA, shows food/nutrient intake reports. Foods editor, recipe generator, advanced search glycemic load. It's a plugin for the I-Metrics CMS
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The Panopticode project provides a standardized format for describing the structure of software projects and integrates metrics from several tools into that format. Reporting options provide correlation, historic analysis, and visualization.
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This RapidMiner-plugin consists of operators for feature selection and classification - mainly on high-dimensional (microarray-) data - and some helper-classes/operators.
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Tangerine is a protein sequence alignment tool based on cross-correlation. Its aim is to provide maximum sensitivity while being computationally efficient.
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Oree - Optimum Real-time Estimation of Events of Interaction: real-time reconstruction of photon interaction events in Gamma Cameras. Optionally making use of a CUDA enable GPU, Oree achieves reconstruction of over 1M events/sec.
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PortscanGeoinfo is a plugin for the powerful Prelude correlation engine. This plugin correlates alerts from Snort NIDS and OSSEC HIDS sensors regarding portscans. Geographical information (GeoIP) is included in the correlated alert.
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The MCAS Project ( Metrics Correlation and Analysis service ) provides integral solution for system operators or VO users to uniformly access, transform and represent disjoint metrics data generated by distributed middle ware or user services.
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funkGen is a software function generator intended as an educational tool. It has a number of basic generators and transforms, but can also combine those into more complex waveforms, Ouput sound files, graphics, or just raw data.
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CIVx is a free advanced PIV (Particle Imaging Velocimetry) code, developped in Fortran and C++. Input : pair of png images. Output : velocity field in NetCDF format. It is used by the UVMAT Matlab code develloped at LEGI.
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Vsam (Vulnerabillity, Scanning, Analysis and Management) is a project dedicated to the release of a virtual appliance for the management and analysis of vulnerability scan data. The main goals are ease of use and stability of the application.
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GEM is a computational method for identification of transcription factor modulators, using expression datasets. The method tests if the correlation between factor and target gene depends on the expression of the modulator.
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Program to performing the complete cycle of neural networks analysis: preparing data, choosing neural network (CasCor, MP, LogRegression, PNN), learning of network, monitoring learning state, ROC-analysis, optimization of network parameters using GA.
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Filters is a image processing library: filter sobel,convolution,morphology,vectorization,segmentation,blob,blur,histogram,susan,threshold,texture,contrast,standard deviation,canny,distance map,matrix,contour,edge,rotation,correlation,gradient anisotropic