Search Results for "alignment" - Page 6
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Showing 522 open source projects for "alignment"
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Matcha-TTS
A fast TTS architecture with conditional flow matching
Matcha-TTS is a non-autoregressive neural text-to-speech architecture that uses conditional flow matching to generate speech quickly while maintaining natural quality. It models speech as an ODE-based generative process, and conditional flow matching lets it reach high-quality audio in only a few synthesis steps, which greatly reduces latency compared to score-matching diffusion approaches. The model is fully probabilistic, so it can generate diverse realizations of the same text while still... -
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ChatGLM2-6B
ChatGLM2-6B: An Open Bilingual Chat LLM
ChatGLM2-6B is the second-gen Chinese-English conversational LLM from ZhipuAI/Tsinghua. It upgrades the base model with GLM’s hybrid pretraining objective, 1.4 TB bilingual data, and preference alignment—delivering big gains on MMLU, CEval, GSM8K, and BBH. The context window extends up to 32K (FlashAttention), and Multi-Query Attention improves speed and memory use. The repo includes Python APIs, CLI & web demos, OpenAI-style/FASTAPI servers, and quantized checkpoints for lightweight local deployment on GPUs or CPU/MPS. -
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PKU Beaver
Constrained Value Alignment via Safe Reinforcement Learning
PKU Beaver is an open-source research project focused on improving the safety alignment of large language models through reinforcement learning from human feedback under explicit safety constraints. The framework introduces techniques that separate helpfulness and harmlessness signals during training, allowing models to optimize for useful responses while minimizing harmful behavior. To support this process, the project provides datasets containing human-labeled examples that encode both performance preferences and safety constraints across multiple dimensions. ... -
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MView
Extract and reformat a sequence database search or multiple alignment
NOTE: The MView repository and web pages have moved to: https://github.com/desmid/mview https://desmid.github.io/mview/ Release tarballs will continue to be uploaded to SourceForge. ---- MView is a command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats. Inputs: - Sequence database search: BLAST, FASTA suites. - Multiple sequence alignment: CLUSTAL, HSSP, MSF, FASTA, PIR, MAF. Outputs: - HTML, FASTA, CLUSTAL, MSF, PIR, RDB (tab-separated). ... -
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MAF
Bash Framework to combine many preprocessing and alignment tools
DNA and RNA nucleotide sequences are an ubiquitous element of all biological cells and are serving on one hand as a comprehensive library of capabilities for the cells and on the other as an impressive regulatory system to control cellular function. The presented multi-alignment framework (MAF) should give researchers a simple sequence alignment platform as a functional template, flexible enough to adjust all steps but also comprehensive enough to join many different tools and custom parameter combinations if in-depth analysis is necessary or advised in e.g. low read rate situations. The platform enables researcher to apply multiple sequence aligners and further pre- and postprocessing tools in flexible combinations to analyze the subtle to remarkable differences between different sequence alignment and processing algorithms applied to the same data basis. ... -
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astap program
Stacking program, astrometric (plate) solver, fits file viewer
...This program can view, measure, "astrometric (plate) solve" and stack deep sky images. Main features: - Stacking of astronomical images including dark frame and flat field correction - Native fast astrometric (plate) solver. - Alignment using an internal star match routine, internal Plate Solver, manual or ephemeris. - FITS viewer with swipe functionality, deep sky and star annotation, photometry and CCD inspector. - Annotation of solar and deepsky objects. - Photometry of point sources, extended sources and variable stars - Blink routine for astro images. -
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Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
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planoMetrix
Corrects scanner distortions using a reference scan for realignment.
...Many scanners introduce periodic errors and inconsistencies in horizontal scaling, leading to distortions in scanned documents. The software works in two phases: Reference Scan: A graph paper (e.g., millimeter paper) is scanned to determine alignment parameters. Correction Phase: Subsequent scans are adjusted based on the reference parameters, ensuring consistent scaling and alignment. This process significantly enhances scan accuracy, making it ideal for precision-sensitive applications such as archival work, document digitization, and CAD-based scanning. PlanoMetrix is open-source and designed for a wide range of scanners. -
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TreeScope
Use dynamic trees to increase interactability with sequence data.
> See TreeScope wiki: https://sourceforge.net/p/treescope/wiki/Home/ Related Software: 1. CStone: https://sourceforge.net/projects/cstone/ 2. CSReadGen: https://sourceforge.net/projects/csreadgen/ 3. CView: https://sourceforge.net/projects/cview/ 4. ChimSim: https://sourceforge.net/projects/chimsim/ 5. TVScript: https://sourceforge.net/projects/tvscript/ 6. SeQuester: https://sourceforge.net/projects/sequester/ 7. TreeScope. (See wiki) -
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Subread
High-performance read alignment, quantification and mutation discovery
The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program. Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. Subread and Subjunc were published in... -
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NGSEP
NGSEP (Next Generation Sequencing Experience Platform)
...NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering, format conversion, comparison, clustering, imputation, introgression analysis and different kinds of statistics. Since version 4, we provide functionalities for management of genomes and transcriptomes, including genome alignment and annotation of transposable elements. A complete list of functionalities is available in our wiki (https://sourceforge.net/p/ngsep/wiki/Home/). BEFORE DOWNLOADING: The green button directs to the jar for command line usage. See the wiki for the GUI and other options -
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SurveyTools
Free desktop toolkit for land surveyors
... * Station Adjustment — preprocessing of total station observations for network adjustment. * Network Adjustment — geodetic network adjustment tools for 1D,2D,3D. * Alignment Solver— horizontal and vertical road/rail alignments setout and measure tools, and batch processing. Imports and exports many formats. * Survey Calculator — Free Station resection, Precise Trigonometric Leveing, Resection etc * Monitoring — leveling adjustment and special monitoring adjustments for deformation surveys. * Coordinate Transformations — affine,Helmert etc transformations 2d,3d... -
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justify
A Go package to justify text, old-school typewriter style
Go already has plenty of packages to justify text, left or right, many coming straight out of the standard library. This little function adds simultaneous left & right alignment (also known as "justification" in many word processors), using a visually pleasant algorithm. More can be read on the README.md file (as well as a few examples of usage). -
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HedgeCam 2
Advanced camera app for Android
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stmani3
Stereo Photo Manipulation
A set of programs for Alignment and Rendering of still Stereo Photos (3D). This is a Python3 updated version of the old StMani -
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TexMaths is an addon designed to provide LaTeX support into LibreOffice. LaTeX equations can be inserted as images (SVG or PNG formats) and the LaTeX code is saved into the image attribute for further editing.
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HNSKY
Hallo Northern Sky planetarium program
Welcome to the semi professional free planetarium program HNSKY for MS-Windows and Linux. This program can control your telescope via the ASCOM or INDI interface, has a comprehensive up to date deep sky database with 30.000 objects and detailed descriptions. A star database with millions of stars and hundreds of Deep Sky Survey images which blends in accurately. Additional the program can access the online version of the Deep Sky Survey allowing online update of the asteroid and comet... -
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Sky simulator for Ascom & Alpaca & Indi
Sky simulator for Ascom using an artificial sky or online DSS images.
...The images can be created artificially or using the online deep sky survey. It simulates also a guide camera. mount, focuser and camera rotator if required. You can also use your own mount in the simulation. Simulation of mount polar alignment errors and mount periodic errors is possible. This simulator is a useful tool for testing the focuser routine, astrometric solving, guiding and test run sequences. Star and a deep sky databases are included. For questions, problems, suggestion visit the forum. Ascom installation required. Install instructions for CCDCiel, APT and Nina : https://sky-simulator.sourceforge.io -
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OpenReco
Open-source photogrammetry for 3D reconstruction.
...Built for researchers, drone operators, surveyors, developers, hobbyists, and digital artists, OpenReco aims to provide a transparent and extensible alternative to proprietary photogrammetry software. The project focuses on ease of use, performance, and reproducible workflows while embracing the open-source ecosystem. OpenReco supports image alignment, camera calibration, sparse and dense reconstruction, mesh generation, texturing, and export to common formats. Whether you're reconstructing archaeological sites, creating digital twins, generating terrain models, or building assets for games and visualization, OpenReco provides a powerful foundation without licensing restrictions. -
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SheetAtlas
Search and compare data across multiple Excel files instantly
SheetAtlas is a free, cross-platform tool for searching and comparing multiple Excel files as a unified database. 100% offline — your data never leaves your computer. KEY FEATURES Unified Search Load unlimited files (.xlsx, .xls, .csv) and search across all sheets with regex support. Row Comparison Compare rows from different files with intelligent column mapping and visual diff highlighting. Data Export Export to Excel or CSV with column filtering, semantic names, data... -
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EqmodGui
User interface for INDI Eqmod telescope driver
Eqmodgui is a user interface for Linux INDI Eqmod telescope driver. It allow to easily set the main parameters require to use this driver and manage the alignment data. Eqmod is now very simple to use on Linux. This software is part of a full suite for astronomical observation: https://sourceforge.net/projects/skychart/ https://sourceforge.net/projects/ccdciel/ https://sourceforge.net/projects/indistarter/ See also: https://sourceforge.net/projects/indi/ -
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MetaEntropy
R package for Virome Mutational Analysis
...Designed to analyze mutational data using tabular 'Single Nucleotide Variant' (SNV) frequency tables generated by variant callers (e.g., 'iVar' or 'LoFreq'), operating independently of consensus sequence estimation and multiple sequence alignment. -
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comer2
COMER2, cross-platform software for protein remote homology search
The COMER method based on sequence profile-profile comparison is one of the most sensitive and accurate computational tools developed for protein alignment and homology search. COMER version 2.1 (COMER2) represents one of the fastest implementations of calculations for sensitive protein homology search. High COMER2 performance is achieved by harnessing the power of the Graphics processing unit (GPU). Hence, a GPU is expected to be installed on the system. The files include the compressed source code and associated and accompanying files for use with COMER2. ... -
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This is an image registration plug-in for Gimp. Image registration (also known as image alignment) is the process of transforming one image so that it best matches another image. This is especially useful when you want to combine two or more images that are similar but geometrically misaligned. Visit the project web page at https://gimp-image-reg.sourceforge.io for detailed information on installing and using the plug-in.
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SmartContextMenu
SmartContextMenu adds a context menu to all windows in the system.
This program is enhanced version of SmartSystemMenu. I hope it will be more convenient, because it supports all types of windows, including windows without a system menu. It should also be more stable and lightweight, as it does not use hooks in separate dll modules. To use the app, please, run the file SmartContextMenu.exe, move the mouse cursor to the necessary window and use the hotkeys “Ctrl + Right Mouse Button”. All the menu settings and hotkeys can be changed in the settings dialog of...
