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Standards efforts related to functional genomics investigations. Consists of a data model (UML) , the Use Cases that drove development, platform specific implementations (Java, XML, Perl, etc.), documentation, and some sample applications.
The MIPE (Minimal Information for PCR Experiments) format is a XML format that enables genomics researchers to store critical information on PCR experiments.
Accompagnying perl scripts are written to read from (dbSTS) or write to a MIPE XML file.
This software is used for studies of comparative Molecular Evolution and Genomics. It can be used to obtain substitution estimates for coding sequences derived from a variety of different sequence data types from genomics projects.
GenomePixelizer is a program for comparative genomics, detection of duplication events in genomes, tracking the "footprints" of evolution. It may be considered as a drawing tool that generates custom images of genomes out of the given set of genes.
...LISA (LabInfoSystem:) stores this information in an easily accessible customizable web-based database. LISA requires PHP4 and MySQL. Keywords: Structural Biology, Genomics