Search Results for "genomics"

...Python source code is available upon request. Milestone: The tool reached about 3000 downloads sine 2012. Article Gemi: PCR primers prediction from multiple alignments. Comparative and functional genomics 2012 PMID: https://www.ncbi.nlm.nih.gov/pubmed/23316117 A great review on designing primer, Gemi, and other tools: Designing degenerate primers: Overview, challenges, and computational methods. Methods in Microbiology. Vol 57, 2025, Pages 73-89; DOI: 10.1016/bs.mim.2025.01.002

...It is part of a larger ecosystem: the compiled HTML / book version of the labs is published via a companion “book” repository, which presents a polished, browsable version of the materials. The content covers topics such as data wrangling in R, statistical inference, genomics workflows, Bioconductor packages, and project-based analyses. Because it’s open and modular, contributors can suggest improvements, update modules, or add new exercises.

This repository is home to the Deep Review, a review article on deep learning in precision medicine. The Deep Review is collaboratively written on GitHub using a tool called Manubot (see below). The project operates on an open contribution model, welcoming contributions from anyone. To see what's incoming, check the open pull requests. For project discussion and planning see the Issues. As of writing, we are aiming to publish an update of the deep review. We will continue to make project...