Search Results for "genomics" - Page 4
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Showing 106 open source projects for "genomics"
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The Celera Genome Browser, developed at Celera Genomics as part of Celera's sequencing and annotation of the human genome, and released as open source in 2006.
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Intrepid Bioinformatic's Integrative Genomics Viewer (IGV) modifications for viewing NGS files on IGV with data located on remote servers, accessed by web services.
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SyMBA is a Data Archive and Integrator that is based on the Functional Genomics Object Model (http://fuge.sf.net) and which archives, stores, and retrieves raw high-throughput data. See http://symba.sf.net and http://www.cisban.ac.uk
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CloudBurst is a parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics.
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The Informatics project is an open-source environment that provides a lasting, extensible, platform-agnostic and distributed infrastructure enabling high-throughput informatics, efficient data management, robust genomics analysis and provenance.
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The APEX Quantitative Proteomics Tool, is a Java implementation of the APEX technique for quantitation of proteins based on standard LC- MS/MS proteomics data. [Pathogen Functional Genomics Resource Center (PFGRC) @ J. Craig Venter Institute (JCVI)]
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Ginkgo is a spotted microarray data pre-processing platform featuring analysis functionalities for CGH and expression data. [Pathogen Functional Genomics Resource Center (PFGRC) @ J. Craig Venter Institute (JCVI)]
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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A RT-PCR data normalization tool that processes RT-PCR data and primer information to make annotation files, and analyzes the data statistically [Pathogen Functional Genomics Resource Center (PFGRC) @ J. Craig Venter Institute (JCVI)].
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MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.
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...Biology Direct 2009, 4:20. Dapeng Wang, Song Zhang, Fuhong He, Jiang Zhu, Songnian Hu, Jun Yu. How Do Variable Substitution Rates Influence Ka and Ks Calculations?Genomics Proteomics Bioinformatics. 2009 Sep;7(3):116-27. Dapeng Wang, Yubin Zhang, Zhang Zhang, Jiang Zhu, Jun Yu. KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies.Genomics Proteomics Bioinformatics. 2010 Mar;8(1):77-80.
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Opensource software projects for genetics and genomics from Sage Bionetworks.
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DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
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GPSR is a resource for genomics, proteomics and systems biology. The aim of this project is to build comprehensive resources in the field of bioinformatics.
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The Comparative Genomics Ontology (CGO) is an OWL ontology initially developed to support the integration of comparative genomics data from heterogeneous resources as part of the ComparaGRID project.
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The Comparative Genomics Vocabulary (CGV) is a SKOS representation of comparative genomics containing terms, text definitions and synonyms of the domain. The vocabulary is structured with broader and narrower relationships between the concepts.
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The Stem Cell Artificial Neural network project entails the analysis and integration of genomics data for extracting the stemness signature of several tissues by training a multiclass single-layer linear artificial neural network.
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pygr is a bioinformatics toolkit for sequence analysis and comparative genomics. pygr is highly scalable (e.g. one can easily query multi-genome alignments) and easy to use. Please see our new project page and wiki at http://code.google.com/p/pygr.
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Project moved to obi.sf.net, new download location: https://sourceforge.net/project/showfiles.php?group_id=177891 The Functional Genomics Ontology provides an integrated set of common and domain-specific terms for use by various biomedical communities.
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TRANSFOG DAS (Translational and Functional Onco-Genomics Distributed Annotation System) is an XML-based annotation system to allow the discovery and analysis of candidate genes potentially involved in cancer onset and progression.
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A collection of utilities, developer tools and libraries developed by the Maize Functional Genomics of Chromatin Consortium
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Ortholytics is a software package for evolutionary genomics pipelining and analysis of orthology. It provides the basic pipelining and analysis tools to compare orthology at the interspecific and genome-wide level.
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Io (ISREC ontologizer) is a program to classify high-throughput genomics data (e.g. microarray results) in the Gene Ontology. Io includes a statistical estimation of the significance of data in the GO nodes and reannotation files for Affymetrix chips.
