Search Results for "clustering algorithm matlab" - Page 4
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Showing 124 open source projects for "clustering algorithm matlab"
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SynergyTwo is ortholog clustering software for both prokaryotic and eukaryotic genomes. It requires Workflow (also available on sourceforge) to manage the computes. It is a reimplementation of the algorithm described in Wapinski et al Bioinformatics 2007.
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Unsupervised TXT classifier
Classify any two TXT documents, no training required - JAVA
This program is made to address two most common issues with the known classifying algorithms. First, over-training and second, shortage of data for a training of categories. Instead, each TXT file is a category on its own, rather than an assigned category. In a way, this is similar to clustering but not really a clustering algorithm since there is some training involved. The summarizer from Classifier4J has been adjusted to accept two inputs (lets call them A and B). Then, the summarizer gets... -
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cCNN
A fast implementation of LeCun's convolutional neural network
Code of this library is partialy based on myCNN MATLAB class written by Nikolay Chemurin. -
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LAVA for AFM
Lloyd's Algorithm-based Volumetric Analysis for AFM Images
This MATLAB-based program enables analysis of AFM images. In particular, it allows the user to measure the volume of all distinguishable features in an image and to isolate and sort those particles. As the name implies, LAVA uses Lloyd's Algorithm, also known as k-means sorting, to identify a small set of volumes representative of the actual distribution of particle in the image. Although developed for determining feature volume, LAVA is also completely compatible with other types of image... -
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VneCplus
虚拟网络映射的仿真器框架
VneCplus是一个虚拟网络映射的仿真器框架，其中实现了NC_DSBA算法，极大地提高了虚拟网络的映射性能。 NC_DSBA（Nodes Clustering and Dynamic Service Balance Awareness Algorithm）虚拟网络映射算法采用节点聚类的策略将虚拟网络请求分割为规模较小的子请求，分而治之，极大地降低了计算复杂度。采用PageRank计算每个节点的负载均衡能力和需求，从而使得虚拟网络请求的映射更趋于均衡，显著提高了虚拟网络映射的收益开销比和承载能力。 -
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qure
software for viral quasispecies reconstruction from next-gen seq. data
QuRe is a program for viral quasispecies reconstruction, specifically developed to analyze long read (>100 bp) NGS data. The software performs alignments of sequence fragments against a reference genome, finds an optimal division of the genome into sliding windows based on coverage and diversity and attempts to reconstruct all the individual sequences of the viral quasispecies--along with their prevalence--using a heuristic algorithm, which matches multinomial distributions of distinct viral... -
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Open Genetic Algorithm Toolbox
This is a MATLAB toolbox to run a GA on any problem you want to model.
This is a toolbox to run a GA on any problem you want to model. You can use one of the sample problems as reference to model your own problem with a few simple functions. You can collaborate by defining new example problems or new functions for GA, such as scaling, selection or adaptation methods. In that case, you should then include your credits in the file, upload it to matlab central and contact the author. Suggestions are also welcome but naturally I won't be able to attend... -
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ACADO Toolkit
Toolkit for Automatic Control and Dynamic Optimization
ACADO Toolkit is a software environment and algorithm collection for automatic control and dynamic optimization. It provides a general framework for using a great variety of algorithms for direct optimal control, including model predictive control, state and parameter estimation and robust optimization. ACADO Toolkit is implemented as self-contained C++ code and comes along with user-friendly MATLAB interface. The object-oriented design allows for convenient coupling of existing optimization... -
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NeuralGas
Self-organized learning
A collection of algorithms based on the topology preserving Neural Gas algorithm for density estimation/quantization/clustering/self-organized learning. I moved this project to GitHub: https://github.com/sergioroa/neuralgas -
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ISAD
Individual Synaptic Activity Detection (ISAD)
... of Spontaneous Vesicle Release at Individual Synapses Using Multiple Wavelets in a CWT-Based Algorithm. Med Image Comput Comput Assist Interv (MICCAI). 2012;15(Pt 1):165-72 ISAD is written in MATLAB and comes with a graphical user interface. -
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EToS (Efficient Technology of Spike sorting; Extracellular recording To Spike trains) is an open-source system for spike sorting. EToS contains the programs of spike detection, feature extraction and clustering.
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CvHMM
Discrete Hidden Markov Models based on OpenCV
This project (CvHMM) is an implementation of discrete Hidden Markov Models (HMM) based on OpenCV. It is simple to understand and simple to use. The Zip file contains one header for the implementation and one main.cpp file for a demonstration of how it works. Hope it becomes useful for your projects. -
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Galaxy-based Search Algorithm
Continuous Optimization by Galaxy-based Search Algorithm (the GbSA)
In this Project, it is attempted to implement the software for the Galaxy-based Search Algorithm (the GbSA). The GbSA is a continuous optimization algorithm inspired from nature. It tries to mimic the spiral movement of spiral galaxies along with a chaotic process to search the solution space for a given continuous optimization problem. For this purpose, a local search is also employed for fine-tuning of the obtained solution. For the first implementation, the GbSA is developed for MATLAB... -
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This is a MATLAB implementation of inverse compositional Active Appearance Models (AAMs), as described in the "Active Appearance Models Revisited" paper by Iain Matthews and Simon Baker.
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Note: This project is no longer maintained. An updated pure Python and experimental MatLab versions are located at https://github.com/robb-brown/GFT. The Fast S-Transform package implements a novel algorithm that solves the S-Transform with O(NlogN) computational complexity. This Fast S-Transform algorithm is fully invertible, and requires only O(N) storage space.
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BLIMToolbox
A set of tools for processing Argus images of the nearshore zone.
BLIM Toolbox is a collection of tools for the extraction and analysis of visual features in Argus images of the nearshore zone. The toolbox provides an implementation of the BarLine Intensity Mapper (BLIM) algorithm, which extracts high-intensity bands from Argus images. Also, several analysis and export functions are included in this toolbox, such as timestack plots and movies. The main incentive for the development of this toolbox was reducing the amount of time and effort a user spends... -
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K-link
Read clustering algorithm which identifies and removes chimeric reads
This project was developed for ESTs. However, there is no reason it cannot be extended for use on amplicon sequences from 454. It is used in conjunction with WCDest clustering software. -
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Gepoclu - Gene Positional Clustering is a suite of Matlab functions for performing positional clustering on genes with optional use of expression data such as what can be obtained from Microarray, EST and qRT-PCR, and PCR.
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PocketAnalyzerPCA combines a geometric algorithm for detecting pockets in proteins with Principal Component Analysis and clustering. This enables visualization and analysis of pocket conformational distributions of large sets of protein structures.
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Leark is a Data Mining library developed in C#.NET. It contains several methods for ranking web documents described with a set of normalized features, and a feature selection algorithm. The methods are based on perceptron and clustering.
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This is a fast C implementation of Arturo Camacho's SWIPE' pitch extraction algorithm. See the project homepage for more about the advantages of the SWIPE' algorithm. swipe-1.0.tar.gz contains the current source, which should compile quite neatly.
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Complex Systems is a toolbox for SCILAB software. This toolbox measures some parameters for graphs representing complex systems: degree distribution, average neighboring degree, average clustering, and shell index (from k-core decomposition).
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A tool to automate (i) software/algorithm benchmarking varying a set of control parameters, (ii) manage and summarize the results using plots and tables. The software works with any standalone command line based software or MATLAB.
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BorderFlow implements a general-purpose graph clustering algorithm. It maximizes the inner to outer flow ratio from the border of each cluster to the rest of the graph.
