Search Results for "jack-graph" - Page 36
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Showing 1665 open source projects for "jack-graph"
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xPyder PyMOL Plugin
Analyze and visualize coupled residues and their networks in proteins
xPyder is a PyMOL plugin to analyze and visualize on the 3D structure dynamical cross-correlation matrices (DCCM), linear mutual information (LMI), communication propensities (CP), intra- and inter-molecular interactions (e.g. PSN), and more, to produce highly customizable publication-quality images. xPyder identifies networks (using concepts from graph theory, such as hubs and shortest path searching), compares matrices and focuses the analysis on relevant information by filtering the data using a modular, user-expandable plugin system that takes advantage of structural and dynamical information, contributing to bridge the gap between dynamical and mechanical properties at the molecular level. -
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nail_systems_biology
NAIL is a toolset for network analysis in the life sciences
The NAIL (Network Analysis and Inference Library) project is a set of tools for solving problems in the life sciences using network (graph) approaches. NAIL includes methods for creating networks, analysing and comparing networks, and for visualising or presenting the results. These methods are designed as self-contained platform-independent components which can be called either from another program, or from a command line. Modelling biological systems as networks (graphs) is becoming a common approach in the life sciences. ... -
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NGSbinningpytools
Python tools for binning NGS scaffolds to various genomes.
Next generation sequencing has opened new avenues for sequencing prokaryotes which were difficult or either impossible to culture. Now, it is possible to sequence all organisms present in a metagenomic community. However, a critical problem is to determine the host organism for each genomic fragment present in the dataset. This project provides the computational tools for assigning the organismal identity for each genomic scaffold in the given dataset. For more detailed documentation... -
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Model Transformation Tools
Bond-graph based modelling tools
A set of tools for modelling dynamic physical systems using the bond-graph methodology and transforming these models into representations suitable for analysis, control and simulation. These tools use, and generate m files for, GNU Octave. -
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js-graph-it is a JavaScript library that allows to represent graphs in html pages by linking blocks with connectors. Common html elements become blocks and connectors by using particular css classes, in a declarative fashion. Drag and drop is provided
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BasisViewer
Browse and visualize your downloaded Basis Band B1 biometric data
This application allows you to graph your Basis data in several ways and allows you to easily move across dates, plot mulitple attributes simultaneously, and understand trends and answer questions. This application assumes you've already run the BasisRetriever application and downloaded your metrics in csv format. -
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EMFTrace
Repository for dependencies between software design artefacts
EMFTrace extends the EMFStore repository by elicitating dependencies between related models of different modeling and programming languages. The explicit recording and modeling of different types of dependencies as traceability links shall support evolutionary changes by impact analysis, early evaluation of quality flaws, and better comprehension. It is an open source project to support the practical application of research results regarding development methods for evolution of software... -
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Algorithms & Data Structures in C++
Algorithms & Data structures in C++
...After the program passes correctly, please initiate Pull Requests, the code is verified and stored in the library, and the new algorithm implementation is published in the README. TAB = 4 space. set ts=4 in vim. Graph output format is Graphviz Dot format. (the output format of the graph is in dot of graphviz.) -
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...In this new version it's very easy to provide the function to plot thanks to a simply graphic interface in style "what you see is what you got". A smart output window allows to plot more than one graph at the same time, and easily compare them. The plotted graphs can be exported as images, in various format. Language supported: italian. Next version probably will include other languages; certainly english will be the first. This is a beta version, so please report any bug if you find something wrong! Your help will be very appreciated! ...
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Trad4 is a fully concurrent, thread safe, graph-based programming language that scales linearly on multiple cores. It is initially intended for deployment in the financial industry to model real-time risk.
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HoneyDrive
Honeypots in a box! HoneyDrive is the premier honeypot bundle distro.
...It contains over 10 pre-installed and pre-configured honeypot software packages such as Kippo SSH honeypot, Dionaea and Amun malware honeypots, Honeyd low-interaction honeypot, Glastopf web honeypot and Wordpot, Conpot SCADA/ICS honeypot, Thug and PhoneyC honeyclients and more. Additionally it includes many useful pre-configured scripts and utilities to analyze, visualize and process the data it can capture, such as Kippo-Graph, Honeyd-Viz, DionaeaFR, an ELK stack and much more. Lastly, almost 90 well-known malware analysis, forensics and network monitoring related tools are also present in the distribution. -
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CIG-P
CIG-P is a simple yet flexible data visualization tool
...CIG-P can be used to compare a) different AP-MS datasets of various baits or b) a particular bait under various perturbations (lenticular section CIG-P). The output of CIG-P is a simple and intuitively easy to grasp visualization of a complex dataset. Publication: CIG-P: Cicular Interaction Graph for Proteomics http://www.biomedcentral.com/1471-2105/15/344/ Previously known as PIVOT (Protein Interaction Visualization and Observation Tool) -
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cosd_java
A Tool for Searching and Demonstrating Code Structure
CoSD is a tool for searching and demonstrating code structure based on graph database. Since some commercial code is involved in the industrial version of CoSD , we just give out a baseline version of it. We also provide a quick demo for this baseline version. To use CoSD, please read the file readme.txt at first. -
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Agent.GUI
The Project moved to github https://github.com/EnFlexIT/AgentWorkbench
The project has moved to github https://github.com/EnFlexIT/AgentWorkbench Agent.GUI is a simulation framework and toolkit based on the JADE framework. It provides functionalities for time aspects, agent-environment interaction, visualization and load balancing, Furthermore, the included application focuses the usability for end users. -
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GraphDruid
Graphs sorting in 2D
Graph Druid program provides topological sorting of mathematical graphs in 2D space. Graph druid uses ranking and clustering methods to sort graph topology. Result of sorting is visualized and can be stored. -
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The MaxParser is written in c++ and can parse with first, second, third and fourth order projective Graph-based Dependency parsing algorithm. The project is the new version of the project "Max-MSTParser". If you want to use this software for research, please reference this web address in your papers
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Medusa
An open source interactive disassembler
Medusa is a disassembler designed to be both modular and interactive. It runs on Windows and Linux, it should be the same on OSX. This project is organized as a library. To disassemble a file you have to use medusa_text or qMedusa. Medusa requires the following libraries: boost >= 1.55 (system, filesystem, thread, date_time), OGDF (required git), and Qt5 >= 5.2 for the GUI. You also need CMake for compilation and a C++11 compiler (VS2015 update 2 on Windows). Git is optional but allows to... -
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METAlab GTG
Matlab toolbox to run a GLM on graph theoretic properties in MRI data
This Matlab toolbox runs a GLM on graph theoretic network properties in brain networks. The GLM accepts continuous & categorical between-participant predictors and categorical within-participant predictors. Significance is determined via non-parametric permutation tests. The toolbox allows testing of both fully connected and thresholded networks (based on a range of thresholds). -
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Money Manager Ex.Net
Utilities and extras for original Money Manager Ex
...First tool is a command line tool to import ofx files into MMEX. Futher development along the lines of: Edit share price details (have historical data and display as a graph...) Display net worth over time Have loan and asset details (e.g. House value and mortgage, Car value and loan with balloon payment). -
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CodeSounding is a sonification framework which makes possible to hear how any existing Java program "sounds like", by assigning instruments and pitches to code statements (if, for, etc) so that the flowing of execution is played as a flow of music.
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MARAGAP
MARAGAP - Modular Approach to Reference Assisted Genome Assembly Pi...
...The optimal reference sequence is used as a template to infer inversions, insertions, deletions and SNPs in the target genome. MARAGAP uses an algorithmic approach to detect and correct inversions and deletions, a De-Bruijn graph based approach to infer the insertions, an affine-match affine-gap local alignment tool to estimate the locations of those insertions and a Bayesian estimation framework for SNPs. -
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SurfaceEmbedder
Embeds graphs into the projective plane, torus and Klein bottle.
SurfaceEmbeder determines if a graph can be embedded into a surface and, if yes, it produces an embedding of the graph in the surface. Right now, only projective plane, torus and Klein bottle are supported. The program uses the OGDF library. -
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Simple PHP web frontend to the RRD databases filled by MRTG. Web pages, graph colors, sizes and legends customization. Easy navigation through the data sources. See demo site http://demo.grapherrd.org
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Kippo-Graph
Full featured script to visualize statistics from a Kippo SSH honeypot
Kippo-Graph is a full featured script to visualize statistics from a Kippo SSH honeypot. It uses “Libchart” PHP chart drawing library by Jean-Marc Trémeaux, “QGoogleVisualizationAPI” PHP Wrapper for Google’s Visualization API by Thomas Schäfer and geoPlugin geolocation technology (geoplugin.com). Kippo-Graph currently shows 24 charts, including top 10 passwords, top 10 usernames, top 10 username/password combos, success ratio, connections per IP, connections per country, probes per day, probes per week, ssh clients, top 10 overall input, top 10 successful input, top 10 failed input and many more. ...
