Search Results for "algorithm" - Page 28
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Showing 1986 open source projects for "algorithm"
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A P2P overlay construction toolkit, which supports routing algorithm researchers in addition to application developers. It provides multiple routing (DHT) algorithms such as Chord, Kademlia, Koorde, Pastry and Tapestry, and a distributed environment emu
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Icons8 Flat Color Icons
Free Flat Color Icons
Icons, illustrations, photos, music, and design tools. Generate stock photos on the go: change faces, emotions, age, gender, and backgrounds. New face processing algorithm and better skin details. Link Lunacy and your website to edit images, texts, and styles on the go. Graphic design software with built-in assets. Free desktop app with all our icons. Our assets inside the software you use daily. Now that we are alone, let us give you something: 312 free icons for personal and commercial use... -
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TreeLayout
Efficient and customizable TreeLayout Algorithm in Java, for NetBeans
Efficiently create compact, highly customizable tree layouts - Based on Walker's algorithm with enhancements suggested by Buchheim, Jünger, and Leipert the software builds tree layouts in linear time. I.e. even trees with many nodes are built fast. Downloads are available at https://sourceforge.net/projects/treelayout/files/. For detailed documentation look at the TreeLayout web site http://treelayout.sourceforge.net/. Development for TreeLayout has moved to https://github.com/abego... -
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FuncEpiMod
Identification of Functional Epigenetic Modules (FEM)
An R-package implementing an algorithm, called FEM, for identifying genes modules of coordinated differential expression and differential methylation associated with a phenotype of interest. The modules are inferred as heavy subgraphs on an interaction network where weights are constructed from the statistics of differential expression and differential methylation. Note: latest version of R-package will be available from Bioconductor (www.bioconductor.org) -
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DE-HEoC
DE-based Weight Optimisation for Heterogeneous Ensemble
We propose the use of Differential Evolution algorithm for the weight adjustment of base classifiers used in weighted voting heterogeneous ensemble of classifier. Average Matthews Correlation Coefficient (MCC) score, calculated over 10-fold cross-validation, has been used as the measure of quality of an ensemble. DE/rand/1/bin algorithm has been utilised to maximize the average MCC score calculated using 10-fold cross-validation on training dataset. The voting weights of base classifiers... -
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AMBER10_Brownian_Dynamics
Designed for coarse-grained protein association simulations
Based on source code of SANDER from AMBER10, Cheung group (https://mynsm.uh.edu/wiki/projects/cheunggroup/) from University of Houston has been continuously making efforts for molecular simulations of coarse-grained protein models. The code is now released for promoting research in protein-protein association simulations. The code includes additional Hamiltonian terms for the coarse-grained model (as described in http://www.pnas.org/content/110/51/20545.abstract) and uses the algorithm... -
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ExSTraCS
Extended Supervised Tracking and Classifying System
This advanced machine learning algorithm is a Michigan-style learning classifier system (LCS) developed to specialize in classification, prediction, data mining, and knowledge discovery tasks. Michigan-style LCS algorithms constitute a unique class of algorithms that distribute learned patterns over a collaborative population of of individually interpretable IF:THEN rules, allowing them to flexibly and effectively describe complex and diverse problem spaces. ExSTraCS was primarily developed... -
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jPass - Cross-Platform Password Manager
Compiled into a single .jar file. Tiny Password Manager. Portable
I did not see a pre-built version of this software on the original developers Github project (https://github.com/gaborbata/jpass), so I am taking it upon myself to compile the releases as they come, so that others don't have to. --Description-- JPass is a simple, small, portable password manager application with strong encryption. It allows you to store user names, passwords, URLs and generic notes in an encrypted file protected by one master password. I will not add the source... -
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CNVision
CNV prediction from Illumina genotyping data
CNVision is a Perl script that runs Illumina genotyping data (all chips from 300k to latest Omni) through PennCNV, QuantiSNPv2.3 and GNOSIS (an in-built algorithm). It merges the results and assesses the quality of the raw data. CNVision can also identify de novo CNVs in family-based data using a highly accurate algorithm that considers the possibility of CNVs in either parent based on the raw genotyping data. The script is optimized to work in a UNIX-based environment; it should work... -
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LightSpMV
lightweight GPU-based sparse matrix-vector multiplication (SpMV)
LightSpMV is a novel CUDA-compatible sparse matrix-vector multiplication (SpMv) algorithm using the standard compressed sparse row (CSR) storage format. We have evaluated LightSpMV using various sparse matrices and further compared it to the CSR-based SpMV subprograms in the state-of-the-art CUSP and cuSPARSE. Performance evaluation reveals that on a single Tesla K40c GPU, LightSpMV is superior to both CUSP and cuSPARSE, with a speedup of up to 2.60 and 2.63 over CUSP, and up to 1.93 and 1.79... -
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GeneticAlgorithms
Framework for using the Genetic Algorithms optimization heuristic.
GeneticAlgorithms is a simple and lightweight framework to implement an optimization heuristic following the Genetic Algorithms model. A genetic algorithm mimics the natural processes of evolution, selection and "survival of the fittest". This framework is intuitive and good integrated with Java 1.5 SDK and later. -
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LDWM: Hash-Based Signatures (draft-mcgrew-hash-sigs-02), PHP implementation of IETF pqcrypto algorithm specification
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mCarts
A hidden Markov model to predict clustered RNA motif sites
Many RBPs recognize very short and degenerate sequences, with targeting specificity achieved by mechanisms such as synergistic binding to multiple clustered sites and modulation of site accessibility through different RNA-secondary structures. mCarts integrates the number and spacing of individual motif sites, their accessibility and conservation, which substantially improves signal to noise ratio. This algorithm learns and quantifies rules of these features, taking advantage of a large number... -
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CliqueSquare
Distributed RDF Processing over Hadoop
CliqueSquare is a system for storing and querying large RDF graphs relying on Hadoop’s distributed file system (HDFS) and Hadoop’s MapReduce open-source implementation. It provides a novel partitioning and storage scheme that permits 1-level joins to be evaluated locally using efficient map-only joins. In addition, CliqueSquare is equipped with a unique optimization algorithm based on graphs and cliques capable of generating highly parallelizable flat query plans relying on n-ary equality joins. -
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TTV
Tensor total variation for low-dose CT perfusion
We have developed a robust and efficient framework to accurately estimate the perfusion parameters at low radiation dosage. Specifically, we present a tensor total-variation (TTV) technique which fuses the spatial correlation of the vascular structure and the temporal continuation of the blood signal flow. An efficient algorithm is proposed to find the solution with fast convergence and reduced computational complexity. -
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NOFI ranking
The Non-Outlier Fragment Ion ranking for enhaced DIA quantification
The NOFI ranking algorithm has been developed to assign low priority to fragment ions affected by interference. The implementation is an R script that can be customized. A future version will contain a modular version. The outline is as follows: 1) The input contains the list of SWATH fragment ion XICs from the identified and quantified peptides by software tools such as Skyline and OpenSWATH. 2) The first step in NOFI is the computation of the 4 attributes (RTd, FWHMd, IRd and IRrep) used... -
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JAABA
The Janelia Automated Animal Behavior Annotator
... detectors that can then be used to automatically classify the behaviors of animals in large data sets with high throughput. JAABA combines an intuitive graphical user interface, a fast and powerful machine learning algorithm, and visualizations of the classifier into an interactive, usable system for creating automatic behavior detectors. Documentation is available at: http://jaaba.sourceforge.net/ -
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Object detection is usually a software-based monitoring algorithm that will signal, for example in the surveillance camera to begin capturing the event when it detects motion. In object tracking, the object is located and the moving object is followed. One of the fundamental steps in many computer based vision systems for object tracking and motion detection is real-time segmentation of moving regions in the image sequences. Segmentation is done in order to detect the object accurately...
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qcv
Computer Vision Framework Library (for Linux)
...++ interface has more features allowing the user to run and analyze complex computer vision algorithm in a few lines of code (see the stereo and surf examples). QCV offers a 2D visualization tool, an on-line on-the-fly parameter editor, a clock tool to evaluate computation times, and a control tool to manipulate input video and sequences of images. Multiple application examples that demonstrate the main features of this framework are provided in the last release. Check it out! -
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CUDA-Quicksort
CUDA-Quicksort: A GPU-based implementation of the quicksort algorithm
CUDA-quicksort is a GPU-based implementation of the quicksort algorithm. CUDA-quicksort is designed to exploit the power computing of modern NVIDIA GPUs. "Two GPU-based implementations of the quicksort were presented in literature: the GPU-quicksort, a compute-unified device architecture (CUDA) iterative implementation, and the CUDA dynamic parallel (CDP) quicksort, a recursive implementation provided by NVIDIA Corporation."[*]. CUDA-quicksort is an iterative GPU-based implementation... -
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SoftSV
Calling structural variations. The soft way.
SoftSV is a tool for the detection of small and large deletions, inversions, tandem duplications and translocations from paired-end sequencing data. It uses aberrant paired-end mappings to determine approximative breakpoint regions and refines the breakpoints by analysing soft-clipped sequences for potential split-reads. For more information about the algorithm and an evaluation, have a look at this publication: "Robust and exact structural variation detection with paired-end and soft... -
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Fluid Gravity 3way
there are 3 observers to every curve, each seeing the other 2
I recently dug up some of my old simulations after to my surprise 3SAT and a theoretical expansion of boltzmann statistics reminded me I already simulated something like that but I didnt know how good a simulation it was. Check how the varying density and shape of electron clouds and soliton-like or fluid drop like blobs of field gradually start to point outward and get thinner, like a soliton is bell curve shaped as seen from outside. More importantly, compare the 2 halfs of electron cloud... -
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... are.... (1) Configured for 4 open source algorithms to perform database searching for peptide identification. Any combination of the 4 algorithm can be chosen. (2) Lists out the genome search specific peptides(Novel peptides). (3) Spectral matches can be visualized for the quality assessment. (4) Lists out the novel proteins and changes in the existing protein annotations. (5) A Visual genomic context of the novel peptides can also be generated.
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The `fmtt` formatter
A plain text formatter for typescripts.
.... - Recognizes preformatted paragraphs (eg source code, tables). - Reformats paragraphs either using the traditional greedy line breaking algorithm, or a TeX-like optimizing algorithm. -
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NCrypted
NCrypted - simple file encryption software with GPU support
NCrypted is a simple file encryption software. It is implemented on top of AES 128-bit algorithm. This software was designed to be as simple as possible, so you won't find any fancy, flashy gui elements or complicated advanced options. You can also use it directly from command line. NCrypted can automatically detect and take advantage of your NVidia graphics card to speed up the file processing.
