Search Results for "data quality cleansing" - Page 24
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Showing 909 open source projects for "data quality cleansing"
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Bycom
Bycom can do methylcytosine calling (5mC calling) from BS-seq.
Bycom can do methylcytosine calling from BS-seq (WGBS and RRBS), and either unmapped reads (FASTQ) or mapped reads (SAM/BAM) could be permitted for the input data. Certain SNPs (C>A/G) can also be selected in the output. 1. There's no softwares or methods identify methylcytosines considering the cell heterozygosis caused by multicellular sequencing. Bycom introduced it along with the sequencing errors and unconverson rate based on the Bayesian model. 2. Several parameters in Bycom could be set as what the users want to, such as depth threshold, quality control value, conversion rate, processor number. 3. ... -
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PlaTypUS
Plasmodium Typing Utility Software
The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes. -
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Seal
A toolkit for distributed processing of HT sequencing data.
...Currently Seal includes tools for: read demultiplexing, read alignment, duplicate read removal, sorting read mappings, and calculating statistics for empirical base quality recalibration. Seal scales, easily handling TB of data. -
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CAPE RNA
Classification based Analysis of Paired Expression data of RNA
CAPE RNA is package of command-line tools for integrated analysis of miRNA-mRNA expression data. miRNA-mRNA interaction states are assigned for each sample independent of a priori known experimental groups. Using these interaction classifications Jaccard-indexes are calculated to evaluate the quality of a predicted interaction based on the distribution of assigned interaction states compared to experimental groups. In addition, negative correlation between miRNA and mRNA expression can be analyzed. -
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GraFIX is a software and a method to detect fixations in low and high quality data, consisting of a two-step process in which eye-tracking data is initially parsed by using adaptive velocity-based algorithms, before it is hand-coded using the graphical interface, allowing accurate and rapid adjustments of the algorithms' outcome. GraFIX is released under the GPLv3 public license (http://www.gnu.org/licenses/).
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Prober
Probe is simple yet effective PHP Mysql database class.
Probe is simple yet effective PHP Mysql database class. The crispy yet short code occupies less memory and carrying you to heights of quality operations. The present version of Probe is “1.0”. You can perform basic CURD operations in easiest way. It is designed in PHP. It has got a very easy format to operate with and make your web pages dynamic. A short yet clear documentation is provided, so that you can learn and code within few minutes. -
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FAT-FREE is a powerful and lightweight PHP 5.3+ Web application framework designed to help you build dynamic and robust Web sites - fast! Unlike other PHP frameworks, Fat-Free aims to be usable - not usual.
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A free, industrial quality library for simulating articulated rigid body dynamics - for example ground vehicles, legged creatures, and moving objects in VR environments. It's fast, flexible & robust. Built-in collision detection.
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OpenCMISS-Zinc
A Library for Interactive Modelling and Visualisation
The OpenCMISS-Zinc Library (opencmiss.org/zinc), or Zinc, is a software library for building interactive graphical modelling and visualisation applications. Models are represented in Zinc as mathematical fields defined over domains, including finite elements with support for high-order basis functions, complex parameter mappings and time variation, and image-based fields. Further fields can be defined by mathematical expressions and algorithms on existing fields, including image... -
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Scertify - TechDebt Community
Benchmark code quality and measure Technical Debt of projects in Sonar
Scertify™ Refactoring Assessment is an open source component dedicated to development & QA teams that provides exclusive benchmark data on Software Quality. It automatically detects the portions of an application that can be refactored, gives valuable information on refactoring strategies, and costs. Though IT departments have matured these last 10 years and have now no doubt on the benefits of a continuous control of code quality, three major concerns were still remaining, without any tools able to effectively addressing these needs: * How to understand quality indicators, and how to compare them with the state of the art? ... -
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A Data Generator
A tool to generate synthetic test data useful to Record matchers
With growing amount of information from multiple sources it has become very hard to relate information to the correct real life entities. Record matching software try to solve this by machine learning techniques. To do this effectively, its necessary to train the record matcher with proper test data which is identical to real life data. Hence, there is a need for a data generator to create the synthetic data to be used for evaluating the quality and capability of record matching software. A data generator creates qualitative test data considering various the real life data glitches entered through various means like human data entry, voice dictation and data scanning. ... -
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methylQA
methylation sequence data quality assessment tool
methylation sequence data quality assessment tool -
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FreeBioreactorController
Controls Bioreactors and Logs Data
An Android (later ported to iOS, WP7, HTML5 ) App that talks via Bluetooth to an Arduino Due monitoring pH/DO/Temperature and Viable Cell Density (optical or impedance), and impeller and valve control through standard Arduino Shield motor controllers and Relay boards. The system has 4 user levels: Engineer, Recipie Manager, Operator and Viewer. The intention is to make high quality software/hardware design complying with GAMP5 guidelines, and FDA CFR21. All software is GNU Public... -
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ANDS-funded QUT Projects
Creation of a metadata store & high quality research data descriptions
Numerous Australian institutions are contributing data descriptions to the Australian National Data Services' discovery portal, Research Data Australia (RDA). Records of varying levels of quality and richness have been created. There are currently no designated exemplars of good practice, or guidelines for the economical production of high quality and information rich data descriptions. -
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jk3d is a java code for 3d interpolation of scattered data. jk3d uses a quality weighted ordinary Kriging method and optional an inverse distances weighting method. It has no graphical user interface and uses ASCII files to define the input.
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TestMax
Frontend & Backend Automation Tool
TestMax is integrated Software Testing framework which can be used to test distributed system by developing rapid test cases using XML configuration in front and backend that talks to each other within the test framework. This tool can be used for Database, webservice, API, Junit, TestNg and Frontend including performance test. The main advantage of this TestMax architecture is separating test data configuration from test case run time environment. It reduces the maintenance of test cases... -
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RedLDA
Redundancy Aware LDA Gibbs Sampler
Redundancy-Aware Topic Modeling Copy Paste Redundancy or Data Duplication are prevalent in many corpora.This redundancy has a negative impact on the quality of text mining and topic modeling in particular. This is a software package of a novel variant of Latent Dirichlet Allocation (LDA) topic modeling, Red-LDA, which takes into account the inherent redundancy of corpora when modeling content. -
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Mkv-Builder
backup dvd and bd
a "Hands Free" application which rips a DVD preserving all quality and content. The target format will be an MKV container and the underlying media files will be x264 for the video content and audio source will remain untouched. This application will be instantiated by a user inserting a DVD or Bluray into their drive. The process will continue without prompting the user until complete. An audio chime notifies the user upon completion. -
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SVG_plot
Plot data in SVG format using C++ library
The SVG_plot C++ library allows, with a few lines of C++ code, to add plotting of data, held in STL containers like vector and map, output as SVG files that can be viewed by all modern browsers. 1D, 2D and Boxplots can be produced, and there are a myriad of options to control appearance. The plots are very high quality and can be expanded without loss of quality (no pixelation!) but are tiny, (compared for a Microsoft Excel plot, for example) and are easily compressible, making them suitable for real-time transmission and update. ... -
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ALCHEMY is a genotype calling algorithm for Affymetrix and Illumina products which is not based on clustering methods. Features include explicit handling of reduced heterozygosity due to inbreeding and accurate results with small sample sizes
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Arthropod Easy Capture
An arthropod specific, specimen level data capture application
...Developed in conjunction with the Plant Bugs Planetary Biodiversity, Tri-Tropic Interactions TCN, and Bee Database projects, AEC is designed for rapid, and accurate data capture, utilizing controlled vocabularies to maintain data quality. The application is Web-based, allowing for collaboration from multiple partners to a centralized, easily maintainable, database. The AEC community, as part of the Advancing Digitization of Biodiversity Collections (ADBC) program, is already tasked to develop the appropriate Web service for sharing data with the iDigBio data portal. ... -
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compare-results
Program comparing Simulation Results for the SBML TestSuite
Compare SBML Test Suite Results =============================== The [SBML Testsuite](http://sbml.org/Facilities/Online_SBML_Test_Suite) allows developers of ODE based simulators to test their implementation against a large number of test cases that test a wide aspect of the [SBML Specifications](http://sbml.org/Documents/Specifications). While implementing my simulator [RoadRunner](http://roadrunner.sf.net) I wanted to be able to compare it using a wider range of parameters: -... -
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Database to CSV
"Database to CSV" project stores/loads data between database and CSVs
"Database to CSV" allows to back-up data from database(Oracle, MySQL, SQL Server) in the form of CSV files. Each table data is stored in a separate CSV file. It also allows to load data from CSV files into the database. Program can be run from UI or from command line. There's one more advanced feature which allows merging of data from CSV file to Database. It is only available from command line. (It will take foreign keys and unique keys into consideration and then try to insert... -
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EasyDataQuality for Pentaho Kettle
EasyDataQuality for Pentaho Data Integration in Kettle
EasyDQ plugins for Contact cleansing in Pentaho Data Integration in Kettle.
