Search Results for "algorithm" - Page 24
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Showing 1986 open source projects for "algorithm"
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SW#
smith waterman, gpu, cuda, alignment
SW# (swsharp) is a library for sequence alignment based on CUDA enabled GPUs. It utilizes Hirschbergs and Ukkonens algorithm for memory efficiency and additional speed up. The library is scalable for use with multiple GPUs. Some parts of the library utilize MPI for CUDA enabled clusters. This work has been supported in part by Croatian Science Foundation under the project UIP-11-2013-7353. Database search now available! Publications: http://journals.plos.org/plosone/article?id... -
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INTEGRATE: Calling gene fusions with exact fusion junctions and genomic breakpoints by combining RNA-Seq and WGS data. To download source code, reference manual and test case, please go to 'Files'. Also refer to 'Wiki' for details.
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NeuralStyler
Turn your videos/photos/gif into art
NeuralStyler Artificial Intelligence converts your videos into art works by using styles of famous artists: Van Gogh,Wassily Kandinsky,Georges Seurat etc Download the latest version 4.0 https://neuralstyler.com/ -
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cupSODA
Deterministic simulator of mass-action based models
... kinetics, and then exploiting the numerical integration algorithm, LSODA -
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Xamp
This is Xamp, a secure and platform independend media player.
This is Xamp, the next generation of a skinnable and platform independent media player which based on the Doppio media framework: https://sourceforge.net/projects/doppio. The player supports various pluggable video and audio formats. Xamp is primarily intend to run as a native executable but can also run as a Java player version working with Java 1.1 VM or above. To ensure the best user experience, the Java version of Xamp doesn't use the Java Media Framework, the high level part... -
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This tool can create one-time-password values based on HOTP (RFC 4226: HOTP: An HMAC-Based One-Time Password Algorithm), TOTP (RFC 6238: TOTP: Time-Based One-Time Password Algorithm) and OCRA (RFC 6287: OCRA: OATH Challenge-Response Algorithm) standards, and also supports client side of OAuth protocols (1.0a, 2.0).
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TopicTiling
TopicTiling a text segmentation algorithm using LDA
The project has moved to GitHub: https://github.com/riedlma/topictiling -
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n-chinese-remainders
chinese remainder theorem - progressive solving, n-soln, extras
"chinese remainder" solves a system of equations over modulus quickly. crtwo is an improvement to Mathematica's release. crtwo: solves Chinese Remainder a pair at a time, (uses gcd), yet is still fast. Which means crtwo, unlike text book soln, uses an algorithm to solve or fail one mod equation at a time. showing win or fail of each eqn and solving other sawtooth intersections is possible, due to that. crAll2@crtwo provides n soln near x for CR using width of soln crchart3... -
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• Objective: Design a Web-based software that predicts the appearance of a new link between two nodes in a social network • Datasets: Dolphin Social Network: https://networkdata.ics.uci.edu/data.php?id=6 • Requirement: Implement the K-NN Algorithm (Section 6.9.1, page 348)
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VoltMR
Pure java NGS mapping soft run on Hadoop 2.0
... followed after mapping. For RNA mapping, splice aware algorithm is implemented. Volt is open source, released as "LGPLv3" -
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MultiFast
Mass String Search and Replace Solution via Aho-Corasick Algorithm
Multifast provides you with efficient library and tool, to search and manipulate data streams on the fly. It can search for a huge number of strings and replace them in one pass. It contains a tidy and efficient implementation of the Aho-Corasick algorithm as a C library. -
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PhyloPart
automated partition of phylogenetic trees
... of a depth-first search algorithm, conjugates the evaluation of node reliability, tree topology and patristic distance analysis. -
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XML2CSV-Generic-Converter
Flatten XML into CSV to suit your mood
Java XML to CSV (XML2CSV) generic conversion facility. Flattens one or more similar XML files into CSV projections. I made it in order to extract data from big XML files and gather them in files more easily opened with a spreadsheet because I didn't find anything adapted to my needs over the Internet when I needed to (Java + truly generic + self-contained algorithm + Unix like command line options + efficiency). It is packaged as an auto executable Jar for convenient command line... -
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QAmiRSeq
A strand aware pipeline for accurate quantification of miRNAs/isomiRs
We designed and implemented a pipeline called QAmiRSeq for fast and accurate quantification of both known miRNAs and isomiRs from high throughput sequencing. QAmiRSeq reconciles its implementation with the unique nature of miRNAs. It is the first algorithm that takes advantage of the strand information for more accurate quantification. All analyses results are organized in a user friendly manner, accessible via a web interface, and can be drilled down interactively by investigators or analysts... -
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An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases. Cas-OFFinder is an ultrafast and highly versatile off-target searching tool. Importantly, Cas-OFFinder is written in OpenCL, enabling operation in diverse platforms such as central processing units (CPUs), graphics pro-cessing units (GPUs), digital signal processors (DSPs), and other processors. Cas-OFFinder runs on Windows and POSIX (portable operating system...
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GUI Ant-Miner is a tool for extracting classification rules from data. It is an updated version of a data mining algorithm called Ant-Miner (Ant Colony-based Data Miner).
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Density-ratio based clustering
Discovering clusters with varying densities
This site provides the source code of two approaches for density-ratio based clustering, used for discovering clusters with varying densities. One approach is to modify a density-based clustering algorithm to do density-ratio based clustering by using its density estimator to compute density-ratio. The other approach involves rescaling the given dataset only. An existing density-based clustering algorithm, which is applied to the rescaled dataset, can find all clusters with varying... -
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MicroZip
Create,extract and encrypt ZIP,GZIP,TAR,BZIP2,TAZ files on Java mobile
... archives with both classic ZIP encryption and AES 256 encryption algorithm. -
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MicroGP
A multi-purpose extensible self-adaptive evolutionary algorithm
MicroGP (µGP, ugp) is a versatile optimizer able to outperform both human experts and conventional heuristics in finding the optimal solution of hard problems. It is an evolutionary algorithm since it mimics some principles of the Neo-Darwinian paradigm. ⚠️ A new version is available on https://github.com/squillero/microgp4 -
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MUMAL2
Multivariate analysis of MS/MS data using ML techniques
Program described in the paper: MUMAL2: Improving sensitivity in shotgun proteomics using cost sensitive artificial neural networks and a threshold selector algorithm, 2016. By Fabio R. Cerqueira; Adilson M. Ricardo; Alcione P. Oliveira; Armin Graber; Christian Baumgartner. -
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pySimiam
Robot simulator inspired by Sim.I.Am
PySimiam is a robot simulator, created to follow the course "Control of Mobile Robots" offered at Coursera. The simulator models an arbitrary number of mobile robots in a 2D environment, each controlled by a arbitrary algorithm. -
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This package implements the algorithm bagging markov random field method with c++ together with Java interface. http://nar.oxfordjournals.org/content/41/2/e42.long Cytoscape App: BMRF-Net-CytoscapeV1.0.tar.gz https://sourceforge.net/projects/bmrfcjava/files/BMRF-Net%20Package/BMRF-Net-CytoscapeV1.0.tar.gz/download Source code and standalone version: BMRF-Net-standalone.tar.gz https://sourceforge.net/projects/bmrfcjava/files/BMRF-Net%20Package/BMRF-Net-standaloneV1.1.tar.gz/download...
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Community Detection Modularity Suite
Suite of community detection algorithms based on Modularity
- MixtureModel_v1r1: overlapping community algorithm [3], which includes novel partition density and fuzzy modularity metrics. - OpenMP versions of algorithms in [1] are available to download. - Main suite containing three community detection algorithms based on the Modularity measure containing: Geodesic and Random Walk edge Betweenness [1] and Spectral Modularity [2]. Collaborator: Theologos Kotsos. [1] M. Newman & M. Girvan, Physical Review, E 69 (026113), 2004. [2] M. Newman... -
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Matrix Keypad and LCD Library
Matrix Keypad and LCD Library for Embedded Projects
This project demonstrates how to use Matrix 4x4 Keypad input from user. Keypad has 16 keys, whenever a key is pressed its counter increment by 1 and keypress with counter value is then displayed on 16x2 LCD. Keypad Hold feature is added in algorithm, which will increment counter speedily, when pressing a key for more than 2 seconds.
