Search Results for "python package" - Page 23
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Showing 875 open source projects for "python package"
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PyBrella
Python script to automate umbrella sampling with AMBER
PyBrella is a script designed to automate the umbrella sampling process, using the AMBER molecular dynamics package. -
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Centralized package manager (CPacMan) - package management (redistribution) solution for server farms. Central package redistribution system increases security and improves manageability.
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UniPyRange
Tool to fetch protein/DNA truncation constructs from Uniprot DB
Very simple python script which saves you the pains of counting the amino acids/DNA bases in fasta files from the Uniprot and NCBI RefSeq Database (1, 2). Lets say you want the amino acid sequence of range 128-387 from a 1000 amino acid protein - this script will help you to avoid counting mistakes by just showing you the specified sequence in amino acids and coding DNA base pairs (ideal for amplification primer design) of a specified Uniprot ID. - Requires BioPython (3) and Bioservices... -
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SWOT Simulator for Ocean Science
This software simulates SWOT observations of sea surface height (SSH)
.... Not designed to directly simulate the payload instrument performance, this SWOT simulator aims at providing statistically realistic outputs for the science community with a simple software package released as an open source in Python. The software is scalable and designed to support future evolution of orbital parameters, error budget estimates from the project team and suggestions from the science community. -
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bictools
bictools - a package to faciliate the analysis of SAAVs using BICEPS.
bictools - a python package to perform variant detection on proteomic MS data using BICEPS (Renard et al. 2012). This repository contains a convenient KNIME workflow to perform the analysis of MS data via OpenMS and a python package (bictools) to handle results from the peptide identification from BICEPs. The combination of both utilities allows to execute the proteomic variant detection workflow. See the wiki page for detailed information and a tutorial. -
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AMPPS
AMPPS is a LAMP/MAMP/WAMP stack
AMPPS is a stack of Apache, MySQL, PHP, Perl & Python. AMPPS enables you to focus more on using applications rather than maintaining them. With AMPPS you can create a website by installing any of the 330+ Apps, customizing it, and then simply publishing it on the internet via a wide choice of hosting service providers. A complete package on your desktop, same like the server that provides many open source web applications. Application Management, Domain management, Database management, etc... -
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...... -Support for OpenVG, SDL and wxwindows. -Support for keyboard, joystick and mouse -New config file structure -No longer dependent on python Shelf or SqLite for metadata. Everything is XML Our goal for this version is to re-architect and polish the 0.7x code and create a package that can be run easily and stably on Windows, OSX and Linux - specifically targeting devices like the Blackberry Pi
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alpaca
Given a web API, Generate client libraries in node, php, python, etc.
... to their respective package managers. You can find some api definitions in the examples directory. -
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ThermV
Comprehensive thermal analysis software package
ThermV thermal analysis software package aims to provide the most sophisticated automatic analysis of thermal analysis data (TG/DTG, DTA and DSC). It offers new algorithm for concurrent peak deconvolution at different heating rates and provides full kinetic analysis of these data, including isoconversional methods for Ea, determination of reaction model and full kinetic triplet, Avrami coefficients, and dimensionality of crystal growth for reactions in the solid state. The project... -
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nice python util
nice python util
paramiko package with all dependencies 64 bit - ssh2 etc - pre-built -
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ant_farm_apk
ant_farm plugin to explore Android Package Files
ant_farm plugin to explore Android Package Files (.apk) . "ant_farm" is available from http://ant-farm.sourceforge.net . ant_farm_apk uses androguard for the heavy lifting. Androguard is available from http://code.google.com/p/androguard . -
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Aelius Brazilian Portuguese POS-Tagger
Python, NLTK-based package for shallow parsing of Brazilian Portuguese
Aelius is an ongoing open source project aiming at developing a suite of Python, NLTK-based modules and interfaces to external freely available tools for shallow parsing of Brazilian Portuguese. It also includes language resources such as language models, sample texts, and gold standards. Presently, Aelius already offers facilities for POS-tagging and chunking corpora and outputting annotations in different formats, such as in XML in the TEI P5 encoding scheme. -
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Jazz, a scientific research tool, is a new python wrapper for LAMMPS implemented to calculate the lifetimes of vibrational normal modes based on forces as calculated for any interatomic potential available in the package. The anharmonic character of the normal modes is calculated via the Monte Carlo-based moments approximation as is described in Yang Gao and Murray Daw, Modeling and Simulation in Materials Science and Engineering (2014). It is distributed as open-source software.
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VoNDA
Visualization of Network DAta
This tools allows for visualization of heterogeneous data sets on SVG network maps -
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SalStat is a small application for statistical analysis emphasising the sciences and social sciences (particularly Psychology). The project is designed around the user interface which has been designed to be simple to use. Think SPSS, but better!
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SpeciesGeoCoder is an open-source software package written in Python and R, that utilise the GDAL library (http://www.gdal.org/) for fast analysis of geoTIFF files, which allows for the easy and fast coding of species into user-defined operational units. For more info: https://github.com/mtop/speciesgeocoder
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Latest on Arxiv
Parse the latest Arxiv RSS stream and get your institute preprints
... this software as a demonstration on how we do it at the Kapteyn Astronomical Institute. The script is run daily as a cron command. Feel free to take and modify this code any way you want. But if you are using it, I'd love to at least here from you and know I didn't put this up for nothing. The program has no major prerequisites, except the Python package pyPdf. It is build for Python 2.6.x series, but will probably work on many others as well. -
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IPred
Integrate ab initio and evidence based gene predictions
IPred (Integrate gene Predictions) is a program that combines the output of ab initio and evidence based (including comparative based) gene finders to improve on the overall prediction accuracy. IPred is written in Python and can be used from the command line as well as with the help of a GUI (java 7 based). It is available for linux, windows and mac. To install IPred, simply download the package and unpack it with >unzip IPred.zip. If you use IPred, please cite the following manuscript... -
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Optimal File Sync
Optimal File Sync is an app for syncing from a device to a server
... network as the target server * Runs as a background service * Syncs when new files have been created * Disregards temporaty video files * Open source * Low system load * Written in pure Python/Py4A/Kivy, meant as a show case app for the Kivy framework * Currently only Android, but an IOS package is in the works. -
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pyll
Set of scripts to help on package deploy on WebMethods Integration Srv
Pyll can be described by a set of tools developed to help on package deployment on a growing environment of 20+ Integration Servers. Actually pyll can deploy over than 100+ packages for 20+ Integration servers under 2/3 hours ( update mode ). Pyll works for WebMethods Integration Server version 7.x and 8.x. -
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Firmata
generic protocol for communicating with microcontrollers
Firmata is a generic protocol for communicating with microcontrollers from software on a host computer. It is intended to work with any host computer software package. There are implementations for multiple microcontrollers and host software packages. -
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PyNetSim-1.0
Freely Available Python Package to Generate Network-based Similarity
Freely Available Python Package to Generate Network-based Similarity -
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WiKID Two-Factor Authentication System
Two-factor authentication system
The WiKID Strong Authentication System is a public-key based two-factor authentication system. It is a flexible, extensible, and secure alternative to tokens, certs and passwords. Application & API support exists for Java, ASP, PHP, Ruby, OpenVPN, TACACS+, etc. Read our eGuide on how to setup your network with two-factor authentication: http://www.wikidsystems.com/learn-more/two-factor-authentication-white-papers -
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The BladeDesigner package is a CAD/CAE tool providing classes for turbomachine blade design. So far it is optimized to be useful in the aerodynamic design process. It comes with a GUI but is most powerful with user defined python scripts.
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Linux Maintainer
Updates and cleans up your computer with a simple GUI.
... Displaying the number of package updates Displaying the amount of space freed during cleaning Adding a scheduler so maintenance can be performed automaticly If you have any more suggestions let me know!
