Search Results for "alignment" - Page 21

daReport is a MS .Net Framework reporting component automating the PrintDocument class and uses XML templates created by the designer application. Tables, pictures, charting, text with simple alignment capabilities. Supports dynamic data from data table

FSA-BLAST is a new version of the popular BLAST (Basic Local Alignment Search Tool) bioinformatics tool, used to search genomic databases containing either protein or nucleotide sequences. FSA-BLAST is twice as fast as NCBI-BLAST with no loss in accuracy.

This is the command-line C-Language implementation of the PATOSEQ motif alignment algorithm as presented in (Bioinformatics, 18(8):1091-1101, 2002).

IndelExtractor is a GUI and command-line application written in Perl that generates various molecular sequence alignment masks, including one to make identification and removal of Indels and their surrounding ambiguous alignment quick and simple.

JAligner is an open source Java implementation of the dynamic programming algorithm Smith-Waterman with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model.

The set of tools for biopolymer sequence analysis together with GUI to work with biopolymer sequence databases. The tools include pairwise and multiple alignment, philogenetic tree construction and other.

GATA is a graphic alignment tool for comparative sequence analysis. It makes use of BLAST to graphically align two DNA sequences, creating box- line- box representations of window scored local alignments. GATA also displays extensive GFF gene annotation.

jsoop (Javascript Object Oriented Programming) is a cross-browser javascript component library targeting Microsoft Internet Explorer and Mozilla. It's inheritance tree includes basic HTML components, alignment, serialization, fieldbinding, xml, xmlhttp

Tifftool is a high-performance tool to clean scanned documents in preparation for onscreen display or for OCR. Features include skew correction, orientation correction, despeckle, page alignment, split pages and batch processing.

Sequence studio main package provides classes and interfaces for various kinds of sequence alignment. Differently from regular expressions it computes similarity with two initially unknown strings. Project page provides code generating applet.

NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.

This is a Java-based multiple protein sequence alignment editor. It will be used by protein scientists and annotators to analyse protein sequences, especially in the PIR file format. It will be connected to Clustalw (A multiple sequencea alignment algorit

trimAl can consider several parameters, alone or in multiple combinations, in order to select the most-reliable positions in the alignment. These include the proportion of sequences with a gap, the level of residue similarity and, if several alignments for the same set of sequences are provided, the consistency level of columns among alignments. Moreover, trimAl allows to manually select a set of columns and sequences to be removed from the alignment. trimAl implements a series of automated algorithms that trim the alignment searching for optimum thresholds based on inherent characteristics of the input alignment, to be used so that the signal-to-noise ratio after alignment trimming phase is increased. ...

mms-300m-1130-forced-aligner is a multilingual forced alignment model based on Meta’s MMS-300M wav2vec2 checkpoint, adapted for Hugging Face’s Transformers library. It supports forced alignment between audio and corresponding text across 158 languages, offering broad multilingual coverage. The model enables accurate word- or phoneme-level timestamping using Connectionist Temporal Classification (CTC) emissions.

Parallel version of MUMMER v. 3.14, a genome-level alignment tool used to assemble complete genomes.

The alignment of the project is to create a application what will present the simulation of the undersea life.

ANNALIST (Annotation, Alignment and Scoring Tool) is a scoring tool for the evaluation of the output of text-based semantic annotation systems.

...Multi-Token Prediction (MTP) boosts both training and inference, while stability optimizations such as weight-decayed and zero-centered layernorm ensure robustness. Benchmarks show it performs comparably to larger models like Qwen3-235B on reasoning, coding, multilingual, and alignment tasks while requiring only a fraction of the training cost.

Hermes 4 405B FP8 is a cutting-edge large language model developed by Nous Research, built on Llama-3.1-405B and optimized for frontier reasoning and alignment. It introduces a hybrid reasoning mode with explicit <think> segments, enabling the model to deliberate deeply when needed and switch to faster responses when desired. Post-training improvements include a vastly expanded corpus with ~60B tokens, boosting performance across math, code, STEM, logic, creativity, and structured outputs. ...

Qwen2.5-VL-7B-Instruct is a multimodal vision-language model developed by the Qwen team, designed to handle text, images, and long videos with high precision. Fine-tuned from Qwen2.5-VL, this 7-billion-parameter model can interpret visual content such as charts, documents, and user interfaces, as well as recognize common objects. It supports complex tasks like visual question answering, localization with bounding boxes, and structured output generation from documents. The model is also...

Llama-3.2-1B-Instruct is Meta’s multilingual, instruction-tuned large language model with 1.24 billion parameters, optimized for dialogue, summarization, and retrieval tasks. It builds upon the Llama 3.1 architecture and incorporates fine-tuning techniques like SFT, DPO, and quantization-aware training for improved alignment, efficiency, and safety. The model supports eight primary languages (including English, Spanish, Hindi, and Thai) and was trained on a curated mix of publicly available online data, with a December 2023 knowledge cutoff. Llama-3.2-1B is lightweight enough for deployment on constrained devices like smartphones, using formats like SpinQuant and QLoRA to reduce model size and latency. ...

FashionCLIP is a domain-adapted CLIP model fine-tuned specifically for the fashion industry, enabling zero-shot classification and retrieval of fashion products. Developed by Patrick John Chia and collaborators, it builds on the CLIP ViT-B/32 architecture and was trained on over 800K image-text pairs from the Farfetch dataset. The model learns to align product images and descriptive text using contrastive learning, enabling it to perform well across various fashion-related tasks without...