Search Results for "data quality" - Page 20
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Showing 888 open source projects for "data quality"
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metawatt
Binner for assembled metagenomes
The Metawatt binner is a graphical binning tool that makes use of multivariate statistics of tetranucleotide frequencies and differential coverage based binning. It also performs taxonomic assessment of binning quality (via diamond BLASTx). Created bins can be edited and exported as fasta. The Metawatt is implemented in Java SWING and minimally depends on Diamond, HMMer3.1, BBMap, Prodigal and the Batik library for the export of SVG graphics. Citation: Strous M, Kraft B, Bisdorf R,... -
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Spawner is a generator of sample/test data for databases. It can be configured to output delimited text or SQL insert statements. It can also insert directly into a MySQL 5.x database. Includes many field types, most of which are configurable.
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Priority Estimation Tool (AHP)
PriEsT is a decision making tool for Analytic Hierarchy Process (AHP).
Priorty Estimation Tool (PriEsT) is a decision analysis tool. You can use it for ranking the options you have, or alternatively, you may use it for resource allocation (budgeting) problems. In PriEsT, you enter a list of available options and then define your criteria for prioritization. After defining criteria, PriEsT allows you to enter your judgements against each criterion, which are then used to calculate the final ranking (or weights). Please cite this if you find it... -
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ngopt
de novo assembly & analysis of Illumina sequence data
de novo assembly & analysis of Illumina sequence data, including the A5 pipeline, A5-miseq, tools to evaluate assembly quality, and scripts to facilitate data submission to NCBI and the RAST annotation system -
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P3BSseq
Parallel processing pipeline for analysis of bisulfite sequencing data
Bisulfite sequencing (BSseq) processing is among the most cumbersome next generation sequencing (NGS) applications. Though some BSseq processing tools are available, they are scattered, require puzzling parameters and are running-time and memory-usage demanding. We have developed P3BSseq, a parallel processing pipeline for fast, accurate and automatic analysis of BSseq reads that trims, aligns, annotates, records the intermediate results, performs bisulfite conversion quality assessment,... -
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JSensor
high performance computing, Wireless Sensors Networks Simulators
...We must use simulators to achieve comfortable confidence levels before real tests. This way, we develop simulation models where entities, named sensors, collect environment data, process data, communicate, move around the space and a lot more. JSensor is a sensor network simulator implemented at Computer Science Department of Federal University of Ouro Preto (DECOM-UFOP), Brazil. In contrast to JSensor counterparts, it is designed to simulate millions of sensors in multicore and, in near future, multicomputer architectures. -
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DemuxFS is a live filesystem to aid on the analysis of transport streams in digital TV systems such as the SBTVD (ISDB-T), DVB and ATSC.
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Speechalyzer
Process large speech data wrt transcription, labeling and annotation
Speechalyzer: a tool for the daily work of a 'speech worker' It is optimized to process large speech data sets with respect to transcription, labeling and annotation. It is implemented as a client server based framework in Java and interfaces software for speech recognition, synthesis, speech classification and quality evaluation. The application is mainly the processing of training data for speech recognition and classification models and performing benchmarking tests on speech-to-text, text-to-speech and speech classification software systems. -
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User Extensible Dictionary
Creation of crowdsourcing dictionary using XDXF format.
...Dictionary offers standard user interface with possibility to create user-specific translation and their sharing. By sharing user dictionaries the scope and possibilities of the dictionary is further expanded, including the possibility to improve the quality of its content. Administrator is needed for quality check. With this crowdsourcing is used. Web server was created in language C# with technology .Net. Dictionary data is saved in XML with XDXF formatting, which allows obtaining or updating the content of dictionary data. Basic English-Czech dictionary is included. This dictionary can be expanded further. -
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ClinQC
ClinQC: A tool for quality control of Sanger and NGS data in clinic
ClinQC is an integrated and user-friendly pipeline for quality control, filtering and trimming of Sanger and NGS sequencing data for hundred to thousands of samples/patients in a single run in clinical research. It can analyze raw sequencing data and produces unified output as FASTQ files per sample/patient with Sanger quality encoding. First, ClinQC convert input read files from their native formats to a common FASTQ format and remove adapters, and PCR primers. ... -
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MutAid
MutAid: Sanger and NGS based pipeline for mutation screening.
MutAid: Sanger and NGS based integrated pipeline for mutation identification, validation and annotation in molecular diagnosis. MutAid is an integrated pipeline for mutation screening in clinical research. It can analyze Sanger sequencing and NGS data from raw reads to list of annotated mutation list. MutAid can analyze and interpret raw sequencing data produced by Sanger or several NGS sequencing platforms. It performs format conversion, base calling, quality trimming, filtering, read mapping, variant calling, variant annotation and co-analyze Sanger and NGS data under a single platform. ... -
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CanReg5 (moved to Github)
Canreg5 is a software package for population based cancer registries
...It has modules to do: data entry, quality control, consistency checks and basic analysis of the data It was designed with an emphasis on user friendliness, it has a modern user interface and is easy to navigate. Is available in several languages. (English, French, Spanish, Portuguese, Russian, Turkish, Georgian, and Chinese.) -
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Restful APIs for Data Cleansing
This is sister project for osDQ which provide Restful APIs
(Beta Version) This is sister project for https://sourceforge.net/projects/dataquality/ . It provides Restful APIs for features for data quality and data preparation features. This project will help projects which want embed data quality and data preparation features in their project or UI using restful calls. Data Cleansing APIs Dockerfile: # Pull base image FROM frnde/jetty-9.4.2-jre8-alpine-cet ADD osdq-v0.0.1.war /var/lib/jetty/webapps/osdq.war EXPOSE 8080 Docker Image https://hub.docker.com/r/vreddym/osdq-web/tags -
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iCAS - An Illumina Clone Assembly System
An Illumina clone assembly system using SOAPdenovo and ABySS
Clone-by-clone sequencing, as a means of achieving high quality assemblies for large and complex genomes, continues to be of great relevance in the era of high throughput sequencing. However, assemblies obtained using current whole genome assemblers are often fragmented and sometimes have issues of genome completeness owing to different data characteristics introduced by multiplexed sequencing. -
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CSV Transformer
transforms xml to csv
The CSV Transformer is a data processing tool which transforms .xml-Files to comma separated values. The CSV Transformer was created in a load and performance testing project, the use case was to be able to transform 2800 configuration files of a big banking application to a single .csv-File. With this single file it was possible to compare the whole configuration between two releases with the already available tool CSV Comparator. This enabled the team to verify if there were any... -
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PyPES Library
Library of analytic potential energy surfaces
The PyPES library is a python-based library of high quality semi-global potential energy surfaces for 50 molecules, each containing 3-6 atoms. The PyPES code enables the generation of energy derivatives to 6th order about any point on the potential energy surface in a range of common coordinate systems, including curvilinear internal, Cartesian and normal mode coordinates. For portability, FORTRAN, C, MATLAB and Mathematica wrappers are provided to interface with PyPES, reading in PyPES-generated Cartesian and normal mode derivative data via a text interface. -
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DBpedia Spotlight
DBpedia Spotlight is a tool for automatically annotating
It is a tool for automatically annotating mentions of DBpedia resources in text, providing a solution for linking unstructured information sources to the Linked Open Data cloud through DBpedia. With a four step approach, DBpedia Spotlight performs named entity extraction, including entity detection and name resolution. It can also be used for named entity recognition, amongst other information extraction tasks. Empower the user experience reusing, interlinking and making semantic queries among high-quality open datasets, extracting meaning from unstructured data. -
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SQL!kE - PHP, SQL JS - Database Explore
SQL!ke is a PHP mySQL RD Database Editing & Explorer
SQL!ke is a new general project for mastering data effectively stored in a database using PHP and Javascript . This RD Explorer works with existing Databases with Embed SQL Query editor and your Custom Table Views. Keep track of this fresh project as it will include a simple blueprint to manipulate en view interconnected data entities. -
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Ava: Testdata Xsl
generates Testdata on base of excel: creates xml,excel,csv,html,sql,+
this tool for test-data-generation receives an 'excel-sheet' as primary input. second important paramter is the 'number of test-records to produce'. The excel-data will be reused as long data is needed. This tool is hightly paramatrisazable by the use of 'xsl scripts'. data can be created, updated, modified and finally exported in a format of your choice Main Fuctions: (1) Generates Testdata (excel, xsl, xml) (2) Exports generated testdata in multiple formats (csv, excel, html,... -
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EPRI Open PQ Dashboard
Demos new techniques for extracting information from PQ data files
...This version consist of a few proof-of-concept applications of applying event severity and trend values to heatmap displays—giving the PQ engineers a wide-area status of PQ for quick interpretation. Data quality has been added so users can quickly see when meters are providing incomplete or invalid data. This dashboard currently accepts power quality data from COMTRADE and PQDIF standard file formats. Other proprietary software interfaces have been added. See the installation manual for more details. -
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ncPRO-seq
Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in... -
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Lossless compressor for multichannel 8,16 and 24 bits audio data, with the ability of password data protection. Being 'lossless' means that no data/quality is lost in the compression - when uncompressed, the data will be identical to the original.
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GloVe
GloVe model for distributed word representation
...The demo.sh script downloads a small corpus, consisting of the first 100M characters of Wikipedia. It collects unigram counts, constructs and shuffles cooccurrence data, and trains a simple version of the GloVe model. It also runs a word analogy evaluation script in python to verify word vector quality. -
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JPGRAR Create/Extract
Extract or create JPGRAR easily. Also creates any other file formats.
JPGRAR software allows you to create or extract archive files from JPGRAR, a seemingly normal JPG file with RAR secretly attached (steganography). Yes trust me, this is possible ;) JPGRAR is popular for sharing files on image board websites, where you are only allowed to share photos and external download links may expire. Your JPGRAR mustn't be compressed by the website for you to share it. It wouldn't work on, say, Facebook which compresses your photo to a lower quality file. While... -
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CNVision
CNV prediction from Illumina genotyping data
CNVision is a Perl script that runs Illumina genotyping data (all chips from 300k to latest Omni) through PennCNV, QuantiSNPv2.3 and GNOSIS (an in-built algorithm). It merges the results and assesses the quality of the raw data. CNVision can also identify de novo CNVs in family-based data using a highly accurate algorithm that considers the possibility of CNVs in either parent based on the raw genotyping data.
