Search Results for "data quality" - Page 19
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Showing 888 open source projects for "data quality"
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MOIRAI
Simple Scientific Workflow System for CAGE Analysis
...After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data. MOIRAI has a graphical interface allowing wet-lab researchers to create, modify and run analysis workflows. Embedded within the workflows are graphical quality control indicators allowing users assess data quality and to quickly spot potential problems. MOIRAI package comes with three main workflows allowing users to map, annotate and perform an expression analysis over multiple samples. -
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CvMob is an Open Source tool to automatic visual analysis of human movement. The software calculates the optical flow to generate data about trajectory, velocity and acceleration using low-quality videos. For more informations, please visit our website: http://www.cvmob.ufba.br/
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MOVIE STREAMING DOWNLOAD v1.0.0 FINAL
All in one pack Online Movie Streaming (AiOPMSD) is free MySQL Databas
ALL IN ONE PACK ONLINE MOVIE STREAMING DOWNLOAD (AiOPMSD) v1.0.0 FINAL VERSION BUILD 4 yeah, this is FINAL version. please send bug to my email. thX All in one pack Online Movie Streaming (AiOPMSD) is free MySQL Database, PHP script for online movie streaming website. no programming skill required. just import database, upload script file and change some configuration. Changelog: Final version build 4 (sunday september 05 2017) : - fix Meta Open Graph (missing... -
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SILVER
SILVER: An efficient tool for stable isotope labeling quantification
With the advance of experimental technologies, different stable isotope labeling methods have been widely applied to quantitative proteomics. Here, we present an efficient tool, named SILVER for processing the stable isotope labeling mass spectrometry data. SILVER implements novel methods for quality control of quantification at spectrum, peptide and protein levels respectively. Several new quantification confidence filters and indices are used to improve the accuracy of quantification results. The per-formance of SILVER was verified and compared with MaxQuant and Proteome Discoverer using a large-scale dataset and two standard datasets. ... -
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DataCleaner
Data quality analysis, profiling, cleansing, duplicate detection +more
DataCleaner is a data quality analysis application and a solution platform for DQ solutions. It's core is a strong data profiling engine, which is extensible and thereby adds data cleansing, transformations, enrichment, deduplication, matching and merging. Website: http://datacleaner.github.io -
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SASSY
Software Architecture Support System
Manage the data for the software architecture or high level design using a knowledge base. Create high quality documentation of the architecture from various viewpoints. Provide a web interface for collaborative architecture creation and reporting. This is an umbrella project for now. Development is occurring in the sub-projects until they can be used to develop the design for SASSY itself. -
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RAP
Web interface management tool
Web interface management tool, open source and free, interface automation, MOCK data automatic generation, automatic testing, enterprise-level management. Produced by Alimama MUX team! Alibaba is all in use! The choice of 1000+ companies! RAP is a web tool that allows web applcation developers to rapidly define and document web APIs that are used in typical RESTful-API based web applications. RAP can also be used to generate API mock data and run API services to enable front-end developers in writing and testing their front-end code that makes consumpiont of the predefined web API loaded with mock data, hence reducing the dependency from the backend development work. ... -
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LedgerSMB
Building High Quality ERP and Accounting Software for SMB & SME
LedgerSMB is an ERP, featuring accounting (including AR, AP, and GL), quotation and order management, and more, for businesses with small to medium transaction volumes. The system has been shown to easily handle thousands of AR/AP transactions per week. Data integrity, security, quality, and responsiveness are key values for our community, both among the developers and, we hope, the users. Additionally we aim to make LedgerSMB into a platform to integrate with, or even serve as a framework for building, other applications. We highly value community contributions and aim to stimulate growth through a broad community by actively providing support and documentation. -
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CoRoPa stands for Computational Rough Paths. The aim of CoRoPa is to provide a software framework for various ideas related to Rough Path Theory, including rough differential equations and the digital description of serial data streams.
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TESTIMAGES
Testing images for scientific purposes
...Please cite the following papers when using any image in this archive: * ASUNI N, GIACHETTI A, "TESTIMAGES: A Large Data Archive For Display and Algorithm Testing", Journal of Graphics Tools, Volume 17, Issue 4, 2015, pages 113-125, DOI:10.1080/2165347X.2015.1024298 * ASUNI N, GIACHETTI A, "TESTIMAGES: a large-scale archive for testing visual devices and basic image processing algorithms", STAG - Smart Tools & Apps for Graphics Conference, 2014. -
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CSV Comparator
CSV Comparator is a tool for comparing files which contain CSV-Data.
CSV Comparator is a tool for comparing files which contain CSV-Data. It was created for performance engineers to be able to have a easy way to compare data from two testruns and be able to automate the comparing process of various files with scripts. There is a command line tool as well as a user interface. In case you need to compare .xml-Files you can convert them to .csv-Files with my other project CSV Transformer. The advantages by using CSV as input and output are the... -
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Metric Collector
A bash-Script to collect metrics from a Linux system.
Collects server and java process information from various tools and creates charts with the data. The script was tested on GNU/Linux with gnuplot 4.4. For the script to work you have to set the variable "JAVA_HOME" to a valid JDK location. Check the documentation in the script file. The following information gets collected: >> output from vmstat >> netstat tcp states and established connections >> information from /proc/fd >> jstat -gc output >> jstat -class output ... -
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Matplotlib is a python library for making publication quality plots using a syntax familiar to MATLAB users. Matplotlib uses numpy for numerics. Output formats include PDF, Postscript, SVG, and PNG, as well as screen display. As of matplotlib version 1.5, we are no longer making file releases available on SourceForge. Please visit http://matplotlib.org/users/installing.html for help obtaining matplotlib.
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The extensible PyPES library is based upon the PyPES library of high quality semi-global potential energy surfaces, http://pypes-lib.sourceforge.net Additionally, the extensible PyPES library provides the ability to construct force field expansions in curvilinear internal coordinates using ab initio data obtained from the GAMESS suite of quantum chemical software. These force fields may then be transformed into rectilinear normal mode coordinates for calculating anharmonic vibrational frequencies using the PyVCI program package, http://pyvci.sourceforge.net
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SoaBox lets you create a virtual version of your SOA environment. Clients (WS-Webservices,RESTful, JMS, HTTP, FTP, Filesystem, POJOs/Custom Code), servers (HTTP/Endpoints) and data (XML, SOAP, CSV, etc). It's written in Java and runs with JBoss 5.x and 6.x
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metasort
A metagenome assembler by reducing microbial community
Most current approaches analyze metagenomic data with the participation of reference genomes. However, novel microbial communities extend far beyond the coverage of reference databases and de novo metagenome assembly from complex microbial communities still remains a great challenge. Here we present a novel experimental and bioinformatic framework, metaSort, for effective construction of bacterial genomes from metagenomic samples. -
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BMDExpress Data Viewer
A Visualization Tool to Analyze BMDExpress Datasets
...However, graphing and analytical capabilities within BMDExpress are limited, and the analysis of output files is challenging. We developed a web-based application, BMDExpress Data Viewer for visualizing and graphing BMDExpress output files. BMDExpress Data Viewer is a useful tool to visualize, explore and analyze BMDExpress output files. Visualizing the data in this manner enables rapid assessment of data quality, model fit, doses of peak activity, most sensitive pathway perturbations and other metrics that will be useful in applying toxicogenomics in risk assessment. ... -
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QuickRNASeq
A pipeline for large scale RNA-seq data analysis
We have implemented QuickRNASeq, an open-source based pipeline for large scale RNA-seq data analysis. QuickRNASeq takes advantage of parallel computing resources, a careful selection of previously published algorithms for RNA-seq read mapping, counting and quality control, and a three-stage strategy to build a fully automated workflow. We also implemented built-in functionalities to detect sample swapping or mislabeling in large-scale RNA-seq studies. -
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This software is for processing binary Doppler radar data in, but not limited to, DORADE sweepfile format. The software can modify metadata and moment data using quality control routines and extract moment data as comma-delimited ASCII files.
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A Matlab software routine to perform Principal Component Analysis using Covariance, Correlation or Comedian as the criterion. Though, initially developed for experiments related to fretting wear but can be effectively used to interpret experimental data from any field. The attached files contain source code as well as a sample MATLAB (.mat) data file of 13 variables. It could be replaced to the data file of your choice. The code is open source but you are requested to give credits if used. Additionally, it also has some useful functions for exporting and generating publication quality figures for different kind of figures in MATLAB
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SmartRoot
Semi-automated root image analysis software
SmartRoot is a semi-automated image analysis software which streamlines the quantification of root growth and architecture for complex root systems. The software combines a vectorial representation of root objects with a powerful tracing algorithm which accommodates to a wide range of image source and quality. The software supports a sampling-based analysis of root system images, in which detailed information is collected on a limited number of roots selected by the user according to specific research requirements. SmartRoot is an operating system independent freeware based on ImageJ and uses cross-platform standards (XML, SQL, Java) for communication with data analysis softwares. ... -
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ViralFusionSeq [VFS]
Accurately discover viral integration events and fusion transcripts
VFS was fullly tested under Ubuntu/Debian system. ** Announcement 1**: VFS is superior to Virus-Clip. https://sourceforge.net/projects/viralfusionseq/files/VFS.vs.Virus-Clip.pdf/download As of 2016, VFS is the only viral integration tool available at NIH HPC system. https://hpc.nih.gov/apps/ViralFusionSeq/ ViralFusionSeq (VFS) is a versatile high-throughput sequencing (HTS) tool for discovering viral integration events and reconstruct fusion transcripts at single-base... -
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RNAseq Tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud
rnaseq_tutorial is a tutorial and educational resource created by the Griffith Lab that guides users through the steps of RNA-seq data analysis. It includes working pipelines for alignment, differential expression, alternative splicing, visualization, and interpretation. It is designed to run in the cloud or local environments, providing introductory material on file formats, reference genomes / annotation, QC, mapping, quantifying expression, visualizing results, etc. The version in that... -
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LogDruid
Generate charts and reports using data gathered in log files
An application to gather, aggregate, chart and report information originating from any log files. It uses regular expressions that are constructed graphically and can be tested in the application against samples. Once configured for a specific type of log file set, the gathering and display of the chart for a new files set can be done in just one click. Contains a sample template to handle few log types: Java GC log, OpenDS access log, Apache access log -
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Colour management projects to share ICC related implementation details and data among graphics applications, libraries and color management services.
