Search Results for "image analysis algorithm" - Page 14
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Showing 655 open source projects for "image analysis algorithm"
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QuantitativeT2
Glioblastoma in mouse brain analyzed by QuantitativeT2
...It is written in XCode. The MRI data was acquired using Bruker 9.4T, 128 T2 echoes were collected for 128x128 image matrix. -
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GenoSuite is a framework developed for proteogenomic analysis. An updated GenoSuite2 is just released where FDRScore (Jones et al. Proteomics 2009) based strategy is used to integrate results from multiple search algorithms. Prokaryotic Proteogenomic Tool(PPT) is developed as a part of GenoSuite framework. PPT is for finding novel translations in prokaryotic genomes and is dependent on Mass Spectrometry based proteomics data and related genome sequence.
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AEO-Light 1.1
Version 1.1 is no longer supported.
Version 1.1 is no longer supported. Please see the new version at https://usc-imi.github.io/aeo-light/ Description for 1.1 continues below: AEO-Light 1.1 is an open-source software application that takes a digital scan of motion picture film with optical sound tracks and directly reproduces the audio, producing as a result a synchronized sound film file. Funded by a grant from the National Endowment for the Humanities and by the University of South Carolina. -
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MathOCR
A scientific document recognition system
...MathOCR is still in the pre-alpha stage, recognition result may not be good enough for practical purposes. MathOCR is a printed scientific document recognition system written in pure Java. MathOCR has the functionality of image preprocessing, layout analysis and character recognition, especially the ability to recognize mathematical expression. MathOCR can work do not depends on other OCR software. -
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RootAnalyzer
A cross-section image analysis tool
Update: A graphical user interface for RootAnalyzer, along with other root phenotyping tools can now be found at https://sourceforge.net/projects/rootphenotypingsuite/ RootAnalyzer is a fully automated tool, for efficiently extracting and analyzing anatomical traits from root cross section images. Using a range of image processing techniques such as local thresholding and nearest neighbor identification, RootAnalyzer segments the plant root from the image's background, classifies and... -
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qcv
Computer Vision Framework Library (for Linux)
QCV is a Qt-based computer vision framework library that provides an easy to use interface to display, analyze and run computer vision algorithms. The library is provided with practical examples to show what you can do with just a few lines of code. OpenCV is used as the supporting computer vision library. QCV provides interfaces for C and C++. The C interface is a set of simple function calls to allow the user to visualize data and obtain events from the system and user input. The... -
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FreeROI is a versatile image processing software developed for neuroimaging data. Its goal is to provide a user-friendly interface for neuroimaging researchers to visualize and analyze their data, especially in defining region of interest (ROI) for ROI analysis.
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starrynite is an image analysis tool for tracking fluorescently-labeled nuclei during C. elegans embryogenesis.
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Elastic Vector Space Analysis
Modifier Vector Space Analysis
The Vector Space Analysis was taken from Classifier4j and modified in following ways: 1. The algorithm was created to imitate the stretching of an elastic-band (I have done actual physical measurements). 2. Stretched Strings are then optimized to give the exact Vector-Space-Analysis results. This way, there is no over-training of the imput, and different sizes of the Strings can be used to get improved results. -
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BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
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scipion-xmipp
Image processing framework to integrate EM software packages.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated... -
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Golden Retriever-Image Retrieval Engine
Library and frontend engine for performing Image Retrieval tasks.
The GRire library is a light-weight but complete framework for implementing CBIR (Content Based Image Retrieval) methods. Currently, the main objective of the project is the implementation of BOVW (Bag of Visual Words) methods so, apart from the image analysis tools, it offers methods from the field of IR (Information Retrieval), e.g. weighting models such as SMART and Okapi, adjusted to meet the Image Retrieval perspective. -
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sWangTiler
A java implementation that generates wang tiles from any input image.
...Kim in "Efficient Texture Synthesis Using Strict Wang Tiles". In order to calculate the lowest cost path between any edge- and sample image an implementation of Dijkstra's algorithm is used which was found in the java graph library 'JGraphT'. Credits to all mentioned parties and to http://www.texturemate.com/. -
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chipexo
model based analysis of ChIP-exo data
Here we developed a novel analysis framework named MACE (model-based analysis of ChIP-exo) dedicated to ChIP-exo data analysis. MACExo has the following four steps: 1) sequencing data normalization and bias correction; 2) signal consolidation and noise reduction; 3) single nucleotide resolution border detection using Chebyshev Inequality; and 4) border matching using Gale-Shapley’s stable matching algorithm. -
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Qi - Quantitative Imaging (PIV and more)
A collection of MATLAB tools for PIV, PTV, particle sizing, and more.
Qi is a collection of MATLAB tools for the quantitative analysis of flow field images. Our Particle Image Velocimetry (PIV) tool, prana, implements a Robust Phase Correlation kernel for PIV analysis, and now includes Particle Tracking Velocimetry and sizing tools. Tools for pressure calculation, proper orthogonal decomposition (POD), and 3d imaging are under development. -
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SplitMEM
Graphical pan-genome analysis with suffix skips
With the rise of improved sequencing technologies, genomics is expanding from a single reference per species paradigm into a more comprehensive pan-genome approach with multiple individuals represented and analyzed together. Here we introduce a novel O(n log n) time and space algorithm called splitMEM, that directly constructs the compressed de Bruijn graph for a pan-genome of total length n. To achieve this time complexity, we augment the suffix tree with suffix skips, a new construct that... -
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Facial Expression Recognition
Facial Expression Recognition System - Matlab source code
We propose an algorithm for facial expression recognition which can classify the given image into one of the seven basic facial expression categories (happiness, sadness, fear, surprise, anger, disgust and neutral). PCA is used for dimensionality reduction in input data while retaining those characteristics of the data set that contribute most to its variance, by keeping lower-order principal components and ignoring higher-order ones. -
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IMAGINE
Biological image viewer and processor
Detection, enumeration, and sizing of biological organisms by image analysis. -
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mfeeg
concise m files(matlab program) for EEG analyses
The aim of mfeeg is not to provide a graphic-user-interface (mfeeg is command line based) and a comprehensive toolbox with a huge body, but to discuss (with you) about various problems met in eeg analysis using the "language" of short m files. Each file in mfeeg is very short and easy to read, thus making it clear that how a given algorithm is implemented. -
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MicroView is a 2D/3D image viewer and analysis tool. It is written in Python and uses VTK for all of its graphical capabilities.
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Advanced Normalization Tools ( ANTs )
Multidimensional image registration, segmentation and statistics
*** This is an archive only, please see https://github.com/ANTsX for this and other ANTsX tools *** Image registration with variable transformations (elastic, diffeomorphic, diffeomorphisms, unbiased) and similarity metrics (landmarks, cross-correlation, mutual information, etc). Image segmentation with priors & nonparametric, multivariate models. *** Current ANTs code, binaries (Mac, Windows, Linux) and support is hosted at Github *** https://github.com/ANTsX/ANTs Docker... -
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MODLEM
rule-based, WEKA compatible, Machine Learning algorithm
This project is a WEKA (Waikato Environment for Knowledge Analysis) compatible implementation of MODLEM - a Machine Learning algorithm which induces minimum set of rules. These rules can be adopted as a classifier (in terms of ML). It is a sequential covering algorithm, which was invented to cope with numeric data without discretization. Actually the nominal and numeric attributes are treated in the same way: attribute's space is being searched to find the best rule condition during rule induction. ... -
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SoNIA (Social Network Image Animator)
Social Network Image Animator creates animations of network data
SoNIA (Social Network Image Animator) is a Java-based package for visualizing dynamic or longitudinal network data and rendering it out as animations. The home page with examples is located at http://sonia.stanford.edu Documentation is at https://sourceforge.net/p/sonia/wiki/Main_Page/ -
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ETU SQL for MySQL
Powerful tool for data analysis and editing
Changelog (Version 7 - Update 1) New Discard Partialy Changes New Edit Row in Window New List of User Connections New Show Image on Form New Quickly View of Cell Values Download also: 1) ETU SQL for MS SQL : https://sourceforge.net/projects/etusqltango/ 2) ETU SQL for Oracle: https://sourceforge.net/projects/etusqlfororacle/ 3) ETU SQL for DB2: https://sourceforge.net/projects/etusqlfordb2/ 4) ETU SQL for PostgreSQL: https://sourceforge.net/projects/etusqlforpostegresql/