Search Results for "compute" - Page 14
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Showing 537 open source projects for "compute"
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Econball
Equation of stock trading simplified to game of moving resizing balls
The econ theory is the value of buy and sell are usually equal, at whatever free market price at the time, so if we trade between 2 things, holding the total of those 2 equal eachother, then you can buy without anyone selling, or sell without anyone buying. Just change from one equal valued type to the other, and the total of all the A's and all the B's are scaled instantly to be the same amounts. Those who change to the majority side lose, and those who change to the minority side win,... -
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PanCGP
PanCGP: Pangenome and Comparative Genome Analysis Pipeline tool
...The aim of developing this high performance and scalable pipeline is to reduce the time cost of calculating the pan-genomes from the given dataset of protein sequences of bacterial strains. The pipeline is able to compute pan-genome analysis from unpublished data-sets as well. Those results are interpreted in the form of pan-genome, core genome/proteins, dispensable genes/proteins, unique/strain-specific genes/proteins, new gene/protein families and total number of genes per strain of the specie. It also extracts the corresponding protein sequences against pan-genome, core protein and dispensable protein sequences in separate FASTA formatted text files. ... -
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ppienergy
Compute Protein Protein Interaction Energy Profile
Protein-protein interactions (PPIs) are crucial for understanding the signaling and disease mechanisms in a cell. In the present work, we have developed a new approach to explore the energy landscape of protein-protein interactions by employing a rapid modified DFT-D approach using the atomic coordinates obtained from X-ray and NMR spectroscopy data. The distance energy plots of contact residues in the interacting regions of several experimentally validated protein-protein complexes were... -
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ParallelAccelerator.jl
ParallelAccelerator package, part of the High Performance Scripting
ParallelAccelerator is a Julia package for speeding up compute-intensive Julia programs. In particular, Julia code that makes heavy use of high-level array operations is a good candidate for speeding up with ParallelAccelerator. With the @acc macro that ParallelAccelerator provides, users may specify parts of a program to accelerate. ParallelAccelerator compiles these parts of the program to fast native code. -
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CUPBB
A Compute Unified Parallel Building Blocks Library Using GPU Computing
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Math Objects is a template based math library for C++ that can handle complex mathematical objects. It can compute the Smith form for matrices of polynomials and the Smith-McMillan form of transfer function matrices
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gtkhst is a collection of GLib2 objects to compute statistics (mean, variance, correlations) in 1 and 2 dimensions and a set of Gtk2 widgets to display 1D and 2D histograms as well as trace plots showing the evolution with time of the monitored quantity
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eTests
Formative evaluation platform
eTests is a PHP/MySQL web-based platform allowing to set formative evaluations using multiple choice questions. It has been developed during a Phd in education at the University of Namur, Belgium. To the students it offers feedback and detailed results to compare with pairs. To teachers it offers a way to analyze questions, validate them, follow the classroom trends of answers, edit questions, surveys, contextualize results regarding to studies sections, period of the year, etc. This... -
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cloc (Count Lines Of Code) counts, and computes differences of, comment lines, blank lines, and physical lines of source code in many programming languages. cloc is now being developed at https://github.com/AlDanial/cloc
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Sequencia
Protein Primary Sequnece Analysis
...JAVA, BIOJAVA were used under Platform Independent architecture. The Tool includes Properties of being offline where result can be stored in Text Format, here we can paste more than one sequence and also upload FASTA file to compute Parameters. -
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SSLTool is a Matlab based toolbox for bioelectromagnetic data (EEG/MEG) visualization, surface Laplacian calculation and modeling. It can compute surface Laplacian on realistic head surfaces given by a triangular mesh. It has a friendly GUI.
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measurer-library
Library of measures developped in Java
Measurer Library is library developed for CoNet? (http://systemsbiology.vub.ac.be/conet) in order to compute more efficiently (times) some measures on paired vectors. The programming languages are Java and C (JNI). -
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JAABA
The Janelia Automated Animal Behavior Annotator
The Janelia Automatic Animal Behavior Annotator (JAABA) is a machine learning-based system that enables researchers to automatically compute interpretable, quantitative statistics describing video of behaving animals. Through our system, users encode their intuition about the structure of behavior by labeling the behavior of the animal, e.g. walking, grooming, or following, in a small set of video frames. JAABA uses machine learning techniques to convert these manual labels into behavior detectors that can then be used to automatically classify the behaviors of animals in large data sets with high throughput. ... -
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CUDA-Quicksort
CUDA-Quicksort: A GPU-based implementation of the quicksort algorithm
...CUDA-quicksort is designed to exploit the power computing of modern NVIDIA GPUs. "Two GPU-based implementations of the quicksort were presented in literature: the GPU-quicksort, a compute-unified device architecture (CUDA) iterative implementation, and the CUDA dynamic parallel (CDP) quicksort, a recursive implementation provided by NVIDIA Corporation."[*]. CUDA-quicksort is an iterative GPU-based implementation of the quicksort algorithm. "Experiments performed on six sorting benchmark distributions show that CUDA-quicksort is up to four times faster than GPU-quicksort and up to three times faster than CDP-quicksort."[*]. ... -
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Javascript-Voronoi
JS implementation of Fortune's algorithm to compute Voronoi cells
This repository implements Steven Fortune’s algorithm (sweep-line method) for generating Voronoi diagrams in JavaScript, providing a performant browser-side solution for computational geometry of planar point sets. With this library you can feed a set of sites (points) and compute their Voronoi cells – the partition of the plane into regions closest to each site – in O(n log n) time. It’s especially useful in web UIs, visualizations, interactive maps, and generative-art contexts where you need dynamic tessellations or diagrammatic layouts. The library exposes API functions for computing cells, retrieving neighbors, and drawing results into canvas or SVG. ... -
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These scripts demonstrate the ability of one-dimensional formulations to reproduce the axial strain field of tensile single-walled carbon nanotubes (SWCNTs). The LAMMPS scripts return the molecular mechanics solution for some armchair and zigzag SWCNTs, while the Matlab scripts compute the numerical solution of a one-dimensional integro-differential tensile rod by B-spline finite elements. By using the proper set of nonlocal parameters, it is possible to correctly capture size and chirality effects observed in the axial strain profile computed with molecular mechanics. Reference M. Malagù, E. Benvenuti and A. ...
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Gryptonite (formerly GPassword Manager)
Simple but Powerful, Cross-Platform Password Management Utility
A simple but powerful cross-platform utility for managing and accessing your most secret data. It stores passwords and whole files, so it can literally store any information you want to keep secret. Access your most-used passwords/URLs right out of a desktop tray icon. For advanced users, it includes a separate utility called Grypto-Transforms, which has a universal hash calculator with all the major hash functions, generic encrypt/decrypt functions and a base64/hex converter. Although... -
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parSRA
Portable Framework for the Parallel Execution of Short Read Aligners
parSRA is a framework to execute short read aligners on compute clusters. It uses the following techniques in order to improve scalability: 1) a fast splitting of the input reads using the FUSE kernel module available in most of current Linux distributions; 2) a balanced on-demand distribution of the reads based on the shared locks of UPC++, an extension of C++ for parallel computing that follows the Partitioned Global Address Space (PGAS) paradigm. parSRA is portable as its configuration file allows the users to parallelize the execution of existing SRA tools without the need to modify the source code of parSRA or the aligner. -
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pure python polyfit
python2/3: compute polyfit (1D, 2D, N-D) without thirdparty libraries
python2/3: compute polyfit (1D, 2D, N-D) without any thirdparty library like numpy, scipy etc. also can be used for least squares solution computation and for A=QR matrix decomposition. Tested with python 2.7 and 3.4 Consider donating to this project: https://sourceforge.net/p/purepythonpolyfit/donation For a Sample use, refer to the WIKI -
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MPJ Express is an implementation of an MPI-like API—standardized by the Java Grande forum—used to write parallel Java applications, which can execute on a variety of parallel platforms ranging from multicore processors to compute clusters/clouds.
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Cpt Kirk
Obtain why and why-not justifications for answer set programs.
Since the method proposed in https://www.researchgate.net/publication/262599199_Unifying_Provenance_and_Debugging_for_Answer-Set_Programs?ev=prf_pub is based on meta-programming, it is possible to use existing state-of-the-art software systems that support well-founded and answer-set semantics, which allowed us to start developing this new tool by extending the one that exists related to a debugging approach: Spock, hence the name Cpt. Kirk. Furthermore and more importantly, one direction... -
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dFORC
Dynamic First Order Reversal Curve
Experimental technique based on the measurement of first-order reversal curves (FORCs) is typically used to evidence the intensity of interactions between the switching physical entities in ferromagnetic samples. It is important to mention that the distribution of coercivity can also be identified from a FORC diagram. dFORC application represents a tool to compute the FORC distribution from the specific experimental data. -
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ANT.Gaussian
Quantum transport code based on Gaussian03/09
Atomistic NanoTransport (ANT) comprises a series of codes designed to compute electronic quantum transport with a broad range of applicability in nanoelectronics. ANT.Gaussian (or ANT.G for brevity) relies on the popular quantum chemistry code GAUSSIAN03/09 code with which interfaces in a seamless manner. Straightforwad use of ANT.G include the computation of the zero-bias conductance (or, alternatively, the electrical current under an applied bias voltage) of a variety of nanoscale systems such as molecular bridges or simply metallic atomic contacts as those created with scanning tunneling microscope or break junction techniques. ...
