Search Results for "length" - Page 13
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Showing 527 open source projects for "length"
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OrthoRBH
Rapidly identify orthologous cDNA sequences in related species
OrthoRBH is a tool/pipeline designed to identify families of protein coding transcripts/genes in related species using a reciprocal blast method. It can search through databases of full-length cDNAs, ESTs or mRNA-seq data. Optional assembly of candidate sequences allows assembly of contigs. It is suited to handling a mixture of EST and mRNA-seq sequence data. It performs batch blast searches, so it is ideal for large multi-gene families. After collecting candidate sequences, it performs... -
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HECTOR
HECTOR is parallel error corrector for 454 datasets
We present HECTOR, a parallel multistage k-hopo spectrum based homopolymer-length error corrector for 454 sequencing data. -
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Safe Password Generator
random + bigger password + more combinations = safe password
Safe Password Generator is a program which generates safe password according to your needs. With Safe Password Generator you can- 1. Generate password from 1 to 25 length. 2. You can make any combination of upper case, lower case, numbers and special characters as per your need. 3. And most importantly- random + bigger password + more combinations = safe password -
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ConoSorter
A Large-scale Cone Snail Transcriptome/Proteome Analysis Program
ConoSorter is a high-throughput standalone program that implements regular expressions and profile Hidden Markov Models (pHMMs) for large-scale identification and classification of precursor conopeptides into gene superfamilies and classes based on the ER signal, pro-, and mature conopeptide regions generated from raw next-generation transcriptomic or proteomic data. ConoSorter also generates a set of relevant additional information (frequency of protein sequences, length, number... -
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BitrateCompressionCalculator for Python
A simple Python utility to calculate file size from bitrate.
BitrateCompressionCalculator for Python (BCCpy) is a very simple application for calculating a file size from length and bitrate. BCCpy came about as the result of my beginning to learn Python and recreating the basic functionality of a simple VB program I wrote back in 1999. Since I was never very proficient with Visual Basic (or Applesoft BASIC for that matter); this application is very basic and could use lots of improvements. I'll implement them as I learn them. As of October 6, 2018... -
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Runge
Runge is an Interactive Solver for Systems of Differential Equations
Runge is an Interactive Solver for Systems of Ordinary Differential Equations. It solves initial value problem (aka Cauchy problem). Few advantages Runge provides: It's fast. It utilizes BLAS and LAPACK libraries optimized for modern multi-core processors. It's interactive. It allows you to start a solution by mouse click on a plane. It's precise. It uses Runge Rule to adjust step length to satisfy required precision on each step. It's effective. When it needs to compute... -
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askcards
Quiz Game SWT
Quiz game. It virtually draws "cards": first you can see the question and guess the answer. Then you can see the "answer" side of the card. Program registers if it matches or not. -
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babybiomorphs
Biomorphs simulation with Baby X
Biomorphs are a way of explaining evolution invented by Richard Dawkins. The shapes are controlled by a small set of genes, which give colour, segment length, size, and degree of recursion. By changing a gene by a small amount, a small difference is made in neighbours. Many fascinating shapes can be found, and you can often home in on a desired shape by selecting relatives that are closer to your goal. The program uses the Baby X toolkit. -
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Formagic moved to GitHub. Please visit https://github.com/Weasle/Formagic/ to stay up to date. Formagic is an easy to use, fast and highly extensible HTML form generator written in PHP5. Formagic provides a framework for validating and filtering user input with very little effort.
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Glider Handicap Task Setting
Task setting software for handicap glider tasks
The software aids in the setting of glider racing tasks. It is particularly used for setting handicap tasks where the length of the task is varied for each handicap such that the final windicapped distance is similar for all gliders. -
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Qudaich
Performs local sequence alignment for NGS data
... structure imposes no restriction on the absolute limit of the acceptable read length, but the current version of qudaich allow read length <2000 bp. Qudaich can be used to align DNA, translated DNA and protein sequences. -
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Bwst
BWST is a short word for Brute-force Word-list Segmentation Technique.
Simply, it’s a brute-force word list generating application. -
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InfinityTK
Game development toolkit
InfinityTK was created with the purpose of aiding myself in the development of my own game engine. I chose to create this library/toolkit because I felt like other alternatives were either too much or not fitting (SDL, SFML, GTK+, Qt) Please download the debug *.tar.gz so you can easily identify bugs I really need feedback; so guize plz, go to the discussions page or create a ticket to let me know what you hate/dislike/despise/love -
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Hierachical_DNAcoder
An Hierachical Approach to Multi-Reference Genome compression
.... To increase the exact aligning rate, we also realign the approximately mapped and unmapped reads by changing the reference sequence or shortening the read length. Meanwhile, we further the study using “lossy” quality values through k-means clustering scheme and find its minute effect on downstream applications. The proposed method has achieved compression ratios from 0.5 to 0.65, which corresponds to space savings of 35%-50%, on experimental datasets. -
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NGS can product a pair of reads which come from one original DNA fragment. If the internal gap can be correctly filled, we will get the full length sequence of original DNA fragment.
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Shobhit-Improved String Search
SHOBHIT-Improved String Search is new improved string search algorithm
In Computer Science, SHOBHIT-Improved String Search Algorithm is a string searching algorithm created by SHOBHIT UPADHYAYA in August, 2013. He is working as a Software Developer in Bangalore India. “This algorithm uses the first, last, mid1 and mid2 index of the substring for a pattern search.” TIME and SPACE Complexity: For a text of length n and substring of length m. Its best case, time complexity is O(m/4) and in worst case, time complexity is O(n – (m/4) ). In all the cases... -
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Snake X 2D
This is game 2D. It was created for learning beginner OpenGL and C++.
This is game 2D. It was created for learning beginner programmer OpenGL and C++. The first version (v 0.1) has a length of 3117 characters. About game: The game has a control as in the old good Tetris (probably not known outside the CIS). If you collect one piece of fruit, then your speed will increase by 5% on the value of the previous one. A record number is written to the file "save.snk". -
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=== This project has moved to github === https://github.com/APTG/libdedx libdEdx is a physics library for stopping power calculations. Stopping power is the energy loss of a particle per unit length (dE/dx). libdedx is supposed to be both fast and easy to use, and features multiple standard dE/dx lists (ICRU, MSTAR...)
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SHOBHIT-Advance String Search
SHOBHIT-Advance String Search is a pattern search Algorithm
In Computer Science, SHOBHIT-Advance String Search Algorithm is a string searching algorithm created by SHOBHIT UPADHYAYA in 2013. He is working as a Software Developer in Bangalore India. “This algorithm uses the first and last index of the substring for a pattern search.” TIME and SPACE Complexity: For a text of length n and substring of length m. Its best case, time complexity is O(m/2) and in worst case, time complexity is O(n – (m/2) ). In all the cases best, average and worst... -
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Slength
returns the length of user supplied strings
I wrote Slength while working on my SQL Final project--you see, in an SQL database when you want to store a string of text in a field you have to declare the field's type as a varchar and give it a maximum length; I wrote slength to help me figure out how long I would need to set any given varchar field. Slength was originally written in Perl, then rewritten in Python, and is now currently developed in Ruby. -
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bmp2rle
Encode bitmap(bmp) file with run-length encoding
Encode bitmap(bmp) file with run-length encoding(RLE), just like RLE4 and RLE8, but extend to RLE16, RLE24 and RLE32. Usually, this project will be used in GUI of embedded system, to make the image files smaller, and save the IO bandwith. If the GUI support JPG or PNG, the compression ratio is much better than RLE, but how about the embedded system encounters both caculate limitation and IO bandwidth limitation? Try this project, I hope it can make a banlance between caculation... -
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PassWordFromHash
Program generates passwords from hash, not from random numbers.
Algorithm: 1. Concatenate "User", "Resource", "Master password" (yes, it is correct order!) to one string. 2. Calculate RIPEMD-160 hash of that string. 3. Convert hash to big number (from 0 to 2^160 - 1). 4. Translate number to 62-sign numeral system. 5. Each digit is represented as char 0-9, A-Z, a-z. 6. So, we get a password! Length is not more than 28 letters, because 62^28 is greater than 2^160. If you have coding experience, please check program correctness and help me improve GUI... -
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Airway Morphology for FIJI
FIJI App for Quantifying Airway Morphology
Run with FIJI make sure you have Fiji, AnalyzeSkeleton, Skeletonize3D, ImageViewer download .jar file into plugins folder, restart FIJI Input takes two 3D images (image stacks) 1.) Volume 2.) Skeleton representation of the volume. Output. Various airway morphometrics (eg. diameter, length), also tesselated 3D models