Search Results for "genetic algorithm c" - Page 13
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Showing 1013 open source projects for "genetic algorithm c"
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A toolkit in C++ and python to process both experimental and simulation data of colloidal particles. Includes among others * a multiscale particle tracking algorithm [1] whose C++ implementation is optimised for 3D confocal data. Python implementation is more versatile (2D and 3D data). * a Leica file reader, * Steindhard bond orientational order calculation * a VTK file writer 1.
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HeaDDaCHe
Hashed dynamic determinants for convex hulls
Description: We propose and implement in C++ the hashed dynamic determinants scheme. This consists of efficient implementations of dynamic determinant algorithms and a hash table that stores intermediate results (matrices and determinants) in order to be used in subsequent steps of the algorithm. Related papers: V.Fisikopoulos, L.Peñaranda. Faster Geometric Algorithms via Dynamic Determinant Computation. -
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RANGE: produce random genetic transcription networks in the NEMO language, which when compiled outputs models in Systems Biology Markup Language. Generate synthetic microarray data, or use NEMO alone to SBML-ize a network, or visualize it in cytoscape.
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SWAPHI: Smith-Waterman on Intel Xeon Phi
The first protein sequence database search on shared-host Xeon Phis
The first parallel algorithm to accelerate the Smith-Waterman protein database search on shared-host multiple Intel Xeon Phi coprocessors. By searching against the UniProtKB/TrEMBL database, SWAPHI achieves a performance of up to 58.8 billion cell updates per second (GCUPS) on a single Xeon Phi and up to 228.4 GCUPS on four Xeon Phis. -
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Virus QSP Modeling
C++ and Python code for simulating RNA virus replication
Stochastic simulation model of poliovirus Sabin-to-Mahoney genetic state transition (C++ code). Models genotypes, virus populations, and quasispecies cloud. Simulates replication error and copy-choice recombination. Various parameters guiding the model are user-specified. Python code post-processes simulation output to produce report files. -
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CUDAlign
CUDAlign is a tool that aligns huge DNA sequences in CUDA capable GPUs
CUDAlign is a tool able to align pairwise DNA sequences of unrestricted size in CUDA GPUs, using the Smith-Waterman algorithm combined with Myers-Miller. It produces the optimal alignment of 1 million base sequences in 45 seconds using a GTX 560 Ti. Many optimizations are being developed for this software. Look at the following papers for detailed information: [1] Edans Sandes, Alba Melo. Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences using GPU.... -
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gametes
Generate complex SNP models and heterogeneous datasets
Genetic Architecture Model Emulator for Testing and Evaluating Software (GAMETES) is an algorithm for the generation of complex single nucleotide polymorphism (SNP) models for simulated association studies. GAMETES is designed to generate epistatic models which we refer to as pure and strict, that constitute the worst-case in terms of detecting disease associations, since such associations may only be observed if all n-loci are included in the disease model. -
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MatlabSimulink2CPP
Demo of Simulink to C++ C or HDL FGA for HFT potential
Video and files download for Visual trading idea to C++ or FPGA HFT Meetup File download sample: test model (Matlab 2014b with Visual Studio 2013 C++ project generated) Powerpoint MATLAB SIMULINK http://quantlabs.net/blog/2015/04/video-and-files-download-for-visual-trading-idea-to-c-or-fpga-hft-meetup/ -
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SplitMEM
Graphical pan-genome analysis with suffix skips
With the rise of improved sequencing technologies, genomics is expanding from a single reference per species paradigm into a more comprehensive pan-genome approach with multiple individuals represented and analyzed together. Here we introduce a novel O(n log n) time and space algorithm called splitMEM, that directly constructs the compressed de Bruijn graph for a pan-genome of total length n. To achieve this time complexity, we augment the suffix tree with suffix skips, a new construct that... -
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This tool is made to score machine translation performance with the TER metric. This code is based on Snover's algorithm.
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GenEng
Copyright (c) 2015 Walter Milner. License is GPL version 3
This is a research project to develop software which can predict changes in a stock price. The basis is genetic engineering. We start with a population of 'programs' and historical data about price changes of some stocks. We rank the programs by their accuracy in price changes. We cull the worst. We breed the rest. And we repeat that for many generations. This project is intended to discover the effectiveness of this approach. -
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ESTReMo
An evolutionary simulator of transcription regulatory networks
ESTReMo is a genetic algorithm-based simulator to explore the evolution of transcription factors and their binding motifs on realistic genomic backgrounds. -
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Implementation of Kohonen 's algorithm for mapping colors randomly generated after the 3 basic components: red, green and blue in C#
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ezSIFT
An easy-to-use standalone SIFT library written in C/C++
*************************************************************************** Updated 06/28/2018 The ezSift project has moved to https://github.com/robertwgh/ezSIFT *************************************************************************** The SIFT (scale-invariant feature transform) algorithm is considered to be one of the most robust local feature detector and description methods. Most of the open-source SIFT implementations rely on some 3rd-party libraries. Some of them even rely on a few different large libraries. These dependencies make the installation, compilation and usage not easy. The ezSIFT library provides a standalone and lightweight SIFT implementation written in C/C++. ... -
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Ginors Sort
sorting algorithm for binary keys
in-place sorting algorithm with O(n*log(k)) time komplexity. The data have to be the structure: struct { unsigned (char/short/int/long); [...] } -
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Face Recognition System
Face Recognition System Matlab source code
Research on automatic face recognition in images has rapidly developed into several inter-related lines, and this research has both lead to and been driven by a disparate and expanding set of commercial applications. The large number of research activities is evident in the growing number of scientific communications published on subjects related to face processing and recognition. Index Terms: face, recognition, eigenfaces, eigenvalues, eigenvectors, Karhunen-Loeve algorithm. -
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fPotencia
Power flow library in C++
fPotencia is the fruit of free time and passion for power systems simulation. After observing the lack of ready-to-implement libraries for power system analisys, and that the existing ones focus on command line workflow, I decided myself to start a project to fill the gap. Since Power system simulations have started needing to be executed in parallel, the old C-like designs are outdated; modular design is now needed to launch many simulations at the same time based on a base... -
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FFTL
Templated Fast Fourier Transform in C++
...The algorithm currently used is Radix-2, so there's easily room for speed improvements. -
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Eye candy showing parallel Conway's Life games in the bit planes of the screen, using boolean BitBlt operations. (Independently rediscovered algorithm given already in Smalltalk-80 Blue Book, by the inventors of BitBlt.)
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Evolutionary Nursery
A simple genetic algorithm for numerical optimization
Evolutionary nursery is a result for my passion for developing genetic algorithms. I implemented this simple GA in 2008. This is especially intended for numerical optimization problems. -
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New CTruck3D Rally
Free-roaming 3D racing game featuring advanced terrain rendering
...For small file-size, a 4k x 4k terrain is available, sampled meter-by-meter so it's very smooth. Lightweight program. This is the form in which I wished to do the first release of the terrain rendering Algorithm I have developed throughout almost 2 years. Written in C++, featuring multithreading (2 threads): a total remake of the first 3D game I did years ago, CTruck3D_Simplex and sequels. This works better, thought the basic idea is the seme. Similar to the old games Terep2 and "1nsane". I am an algorithmist, not a game developer: so it was hard for me to put this togather. ... -
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mpz_aprcl32
MPZ APRCL32 can prove the primality of numbers, written in C and GMP.
This code contains an implementation of the APR-CL primality proving algorithm. It is a conversion of the Java based APRT-CLE written by Dario Alpern, who had written his based on the UBASIC version from Yuji Kida. This version incorporates improvements based on Jason Moxham's APR-CL code, which greatly reduced run-time memory requirements. mpz_aprcl is meant to be compiled on systems that support C, GMP, and a 64-bit data type. -
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mpz_aprcl
MPZ APRCL can prove the primality of numbers, written in C and GMP.
This code contains an implementation of the APR-CL primality proving algorithm. It is a conversion of the Java based APRT-CLE written by Dario Alpern, who had written his based on the UBASIC version from Yuji Kida. This version incorporates improvements based on Jason Moxham's APR-CL code, which greatly reduced run-time memory requirements. mpz_aprcl is meant to be compiled on systems that support C, GMP, and a 64-bit data type. -
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lccs
Longest Common Coding Subsequence algorithm
This is an implementation, in C++, of the Longest Common CDS Subsequence algorithm. Given two CDS (coding) sequences A and B, program will find the longest sequence of CDS that is common and ordered in A-B and B-A. -
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