Search Results for "algorithm" - Page 12
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Showing 1986 open source projects for "algorithm"
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HipMer
A High performance distributed memory assembler for big genomic data
HipMer is the first end-to-end de novo genome assembler designed for extreme scale analysis via efficient parallelization. The single-genome assembly implementation is a high-performance parallelization and port of the Meraculous assembler (http://jgi.doe.gov/data-and-tools/meraculous/). The MetaHipMer extension is a recent addition to HipMer that is geared to large metagenomes and leverages iterative kmer sizes and a specialized scaffolding algorithm to produce increased contiguity... -
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Basic Blind Chess
Blind Chess using Taiwan rule
Blind Chess also known as "Dark Chess" (暗棋) or "Banqi" or Half Chess , is a two-player Chinese board game played on a 4x8 grid, or half of the xiangqi (Chinese Chess) board. This application is using Taiwan rule. AI is using basic minimax tree structure and some rules. Advanced algorithm such as Upper Confidence bounds applied to Trees and Monte Carlo Tree Search are NOT used. This app is single player vs computer only. For English user, Christakis Giorgios made Software Requirements... -
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MScDB
A Mass Spectrometry Centric Protein Sequence Database for Proteomics
... theoretical and empirical information from large-scale proteomic data to generate a mass spectrometry centric protein sequence database (MScDB). The core modules of MScDB are an in-silico proteolytic digest and a peptide centric clustering algorithm that groups protein sequences that are indistinguishable by mass spectrometry. -
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GRAMPC
A gradient-based augmented Lagrangian framework for embedded NMPC
GRAMPC is a nonlinear MPC framework that is suitable for dynamical systems with sampling times in the (sub)millisecond range and that allows for an efficient implementation on embedded hardware. The algorithm is based on an augmented Lagrangian formulation with a tailored gradient method for the inner minimization problem. GRAMPC is implemented in plain C with an additional interface to C++ and MATLAB/Simulink. The basic structure and usage of GRAMPC are described in the documentation... -
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qiji-font
Typeface from Ming Dynasty woodblock printed books
... replaceable by an automatic corner-detection algorithm). Generate a low-poly mask for each character on the grid, and save the thumbnails (using OpenCV). First, red channel is subtracted from the grayscale, in order to clean the annotations printed in red ink. Next, the image is thresholded and fed into the contour-tracing algorithm. A metric is then used to discard shapes that are unlikely to be part of the character in interest. -
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Our goal is to create a pervasive platform for application engineers. Therefore we've created a modular and open framework architecture. It supports the engineers in the usage of artificial intelligence, biological behaviours and developing distributed systems in C++, C# and other languages. The basic modules of our framework can be easily used to develop also common applications for Windows, Mac-OSX and Linux platforms. It provides a hugh pool of standard functionality abstracting the...
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JQuickBase
elementary database files for Java, B+ tree index files, ISAM
Java API to realize quick ISAM (Index Sequential Access Method) functionality for application in the file system. Includes scalable database files w/ space recovery and variable record length, scalable B+Tree index files. Supports file backup and restore. Two package types: one with and one without strong file encryption using Twofish algorithm and state-of-the-art encryption technology. -
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JSONCrush
Compress JSON into URL friendly strings
This simple system allows for excellent compression of uri encoded JSON strings using the JSCrush algorithm. -
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LR Parser and Lexer Generators: Fortran
LR parser generator and lexer generator for use in Fortran
The generator for LR parsers uses Pager's method, augmented with Tom Pennello's Forward Move Algorithm for error recovery. The grammar specifies identifiers for nodes in the abstract syntax tree, and the identifiers for tokens. It generates Fortran declarations for tree node identifiers and named constants that represent the PDA. The lexer generator accepts regular expressions and generates a DFA. It generates Fortran declarations for character classes, recognized objects, named constants... -
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Hyperledger Burrow
A permissioned Ethereum smart-contract blockchain node
... (WASM) smart contracts. Burrow networks are synchronized using the Tendermint consensus algorithm. A node can detect if its state is corrupted or if a validator is dishonestly executing the protocol. Run a private or public permissioned network. Stakeholders may vote for autonomous smart contract upgrades. Application state is organised in an event stream and can drive external systems. -
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The ASCO project aims to bring circuit optimization capabilities to existing SPICE simulators using a high-performance parallel differential evolution (DE) optimization algorithm. It supports Eldo, HSPICE, LTspice, Spectre, and Qucs.
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PhiSpy: A novel algorithm for finding prophages in microbial genomes that combines similarity-based and composition-based strategies
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SYSU-OpenEdgeAI
A public account displaying works from SYSU-OpenEdgeAI Club
SYSU-OpenEdgeAI Club is a community of geeks who have innovative ideas as well as a great passion for Edge AI technologies. All of our works are open source, and we sincerely welcome all the Edge AI lovers to join us to solve problems and learn! Until 2020-12-27, we have already upload three projects: 1. ov_carplate.zip is a car plate recognition project based on Zedboard Zynq-7000. 2. mnist_hls.zip is a realization of Lenet for MNIST handwritten digit recognition using Vivado hls... -
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MAGeCK
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support... -
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WSClean
WSClean is a fast widefield interferometric imager
WSClean (w-stacking clean) is a fast generic widefield imager. It uses the w-stacking algorithm and can make use of the w-snapshot algorithm. As of Feb 2014, it is 2-12 times faster than CASA's w-projection, depending on the array configuration. It supports full-sky imaging and proper beam correction for homogeneous dipole arrays such as the MWA. WSClean allows Hogbom and Cotton-Schwab cleaning and has wideband, multiscale, compressed sensing and joined-polarization deconvolution modes. All... -
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Triangula
Generate high-quality triangulated and polygonal art from images
Generate high-quality triangulated and polygonal art from images. Triangula uses a modified genetic algorithm to triangulate or polygonate images. It works best with images smaller than 3000px and with fewer than 3000 points, typically producing an optimal result within a couple of minutes. For a full explanation of the algorithm, see this page in the wiki. You can try the algorithm out in your browser, but the desktop app will typically be 20-50x faster. If the app isn't running on Linux, go... -
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Upscale
This program is upscaling any image by a factor 2 using an algorithm
This program is upscaling any image by a factor 2 using an algorithm of cubic interpolation. You may need to install the following libraries to run the program, tqdm, itertools, and OpenCV. -
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ComputerGeneratedMusic
Computer generated music
Computer generated music currently using Rust and a towers of hanoi algorithm. -
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gml4gtk
small console GML or graphviz DOT graph viewer
directed graph layout program for GML (Graph-Markup-Language) graph or partial graphviz DOT graph -
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Scout Elasticsearch Driver
Offers advanced functionality for searching data in Elasticsearch
This package offers advanced functionality for searching and filtering data in Elasticsearch. -
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miRDP2
Accurately and fast analyzing microRNAs transcriptome in plants
miRDeep-P2 (miRDP2) is developed to accurately and fast analyze microRNAs (miRNAs) transcriptome in plants. It is adopted from miRDeep-P (miRDP) with new strategies and overhauled algorithm. We have tested miRDP2 to analyze miRNA transcriptomes in such plants with gradually increased genome size as Arabidopsis, rice, tomato, maize and wheat. Compared with miRDeep-P and several other computational tools, miRDP2 processed NGS data with superior speed. By incorporating newly updated plant miRNA... -
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Jasmine
Super fast Java aexpression and algorithm evaluator
V1.0.1 fully compatible with PS2 and 3. Jasmine uses the ASM byte code manipulation library (http://asm.ow2.org/) to create Java byte code to evaluate numerical expressions and algorithms. Evaluation of compiled expressions is very fast, in most cases it is faster than the equivalent byte code produced by the Java compiler (javac). -
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Learn Julia the Hard Way
Learn Julia the hard way
... be hard-pressed to find tasks it's completely unsuitable for (although that does not mean it's the best or easiest choice for any of them). Julia was developed with the occasional reference to R, and with an avowed intent to improve upon R's clunkiness. R is a great language, but relatively slow, to the point that most people use it to rapidly prototype, and then implement the algorithm for production in Python or Java. Julia seeks to be as approachable as R but without the speed penalty. -
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Anime4KCPP
A high performance anime upscaler
Anime4KCPP provides an optimized bloc97's Anime4K algorithm version 0.9, and it also provides its own CNN algorithm ACNet, it provides a variety of way to use, including preprocessing and real-time playback, it aims to be a high-performance tool to process both image and video. This project is for learning and the exploration task of the algorithm course in SWJTU. Anime4K is a simple high-quality anime upscale algorithm. Version 0.9 does not use any machine learning approaches and can be very... -
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Polar Bookshelf
A personal knowledge repository for PDF and web content
Polar is an integrated reading environment to build your knowledge base. Actively read, annotate, connect thoughts, create flashcards, and track progress. Save time in creating flashcards in one click from text highlights. We use OpenAI's GPT-3 to automate this tedious process. Review them with our spaced repetition algorithm or sync them to Anki. Manage and save for later all your PDFs, EPUBs, and web pages in one place. Use tags, reading progress, and detailed document information to stay...
