Search Results for "simulation tools peptide"
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Showing 76 open source projects for "simulation tools peptide"
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Java Modelling Tools is a suite of scientific tools for performance analysis and modelling using queueing theory and colored stochastic Petri nets. Models are solved either with analytical, asymptotic or simulation methods; workload characterization tools are also included in the suite. See the project website for more details: http://jmt.sf.net
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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SolarNetwork
For monitoring and control of distributed generation and consumption
SolarNetwork started as a simple set of client and server tools to collect and analyse solar power information from a distributed network of solar power collectors. SolarNetwork is now expanding into a set of tools to not only collect and analyse information, but to also control and influence behaviour of a distributed network of nodes where energy is being generated and/or consumed. The name implies it is for solar generated energy only, the SolarNetwork can in fact be used with any... -
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eCxx
A C++ library for AVR and NodeMCU
NOTE: This project is marked with 'Status: Abandoned' on SourceForge because not enough time can be dedicated to this project. However it may still get sporadic commits to the repository. eCxx is a library for AVR and NodeMCU tailored for micro LED displays and lighting effects. eCxx is utilizing Makefile build system. Java and Python based applications/tools are also included to ease the development and debugging process using the host PC. On one side, eCxx supports the original... -
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Ultrashort Pulse Propagator
A powerful simulation for designing femtosecond lasers and amplifiers.
This is a simulation package developed for numerical simulation of ultrashort pulse propagation in optical media and pulse generation from mode-locked lasers. Although the code is primarily intended for investigations of fiber links, fiber amplifiers and fiber lasers, it can be applied to any other setting for which the governing equiations are valid. The physics included in the code is based on a generalized nonlinear Schrödinger equation, including higher order dispersion, stimulated Raman... -
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The Systems Biology Format Converter (SBFC) is a Java generic framework aiming to translate any systems biology model format into another. The SBFC Web Site providing detailed feature description and instructions for installing, using and developing new modules is: http://sbfc.sourceforge.net/ . Currently, SBFC allows the user to convert SBML models into the formats: BioPax, Matlab, Octave, XPP, DOT, and SBGN. Due to its modular design fast development and addition of new converters...
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UMHDL
Integrated Development Environment (IDE) for learning HDL
UMHDL is an educational Integrated Development Environment (IDE) intended for learning digital designing with programmable logic devices using Hardware Description Languages (HDL) through simulation. It is an open-source application created at the Miguel Hernández University (UMH). The aim for the UMHDL development was to have a graphical application that allows learning the VHDL language without licensing restrictions (using some existing open-source tools) and requiring few resources. So, the interface developed acts as a front-end that allows writing code (with syntax highlighting), invokes an external VHDL compiler and simulator (such as GHDL), and displays the result of the simulation graphically as waveforms (invoking to GTKWave). -
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GatcomSUMO
Automates the building of VANET simulations using SUMO and OMNeT++
GatcomSUMO is a multi-platform application that facilitates the building of VANET simulations using the SUMO traffic simulator and the OMNeT++ network simulator. The tasks related to the generation of abstract or synthetic scenarios, the download and conversion of network scenarios based on real maps (e.g. from OpenStreetMap), the route creation process, and the vehicles mobility modelling are integrated in a user-friendly graphical interface. This tool performs the necessary actions by... -
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WorldWind Java
For building cross-platform 3D geospatial apps in Java
WorldWind Java is an open-source virtual globe SDK developed by NASA that allows developers to embed a 3D Earth visualization into Java applications. It renders detailed global terrain and satellite imagery, and supports real-time geographic data overlays, making it ideal for applications in geospatial analysis, education, simulation, and scientific visualization. With its flexible API and plugin system, WorldWind Java is a powerful platform for building interactive geospatial applications... -
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Mimosa is a modeling and simulation platform, covering the process from building conceptual models to running the simulations. The specification uses ontologies and an extensible set of formalisms for the dynamics. The simulation kernel is based on DEVS.
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Visual Figaro
System safety, dependability and security analysis
Visual Figaro is an integrated environment to develop component libraries for the dependability modeling tool KB3 used by EDF (http://www.edf.fr/recherche/codes-de-calcul/kb3). KB3 is based on the FIGARO reliability modeling language, suitable for describing CTMC (continuous time Markov chains), DES (discrete event simulation) models, and for automatic generation of fault trees. FIGARO is objet oriented, close to natural language and enables building libraries of reusable components (knowledge bases). Go to "Files" tab to download various Figaro based tools (Visual Figaro, KB3, YAMS), lots of examples and documentation. -
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Makani
Makani was developed a commercial-scale airborne wind turbine
...This open-source repository contains the complete software stack that powered Makani’s research and flight systems, including the flight simulator, autopilot controller, avionics firmware, visualization tools, and ground control software. The software enables simulation, control, and analysis of the Makani M600 turbine system, designed to operate offshore and autonomously manage complex aerodynamic behaviors. Built primarily in C++ and Python, the codebase integrates real-time flight control, sensor fusion, aerodynamic modeling, and telemetry visualization. ... -
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JAS-mine
Toolkit for agent-based & dynamic microsimulation modelling
JAS-mine is a Java platform that aims at providing a unique simulation tool for discrete-event simulations, including agent-based and microsimulation models. With the aim to develop large-scale, data-driven models, the main architectural choice of JAS-mine is to use whenever possible standard, open-source tools already available in the software development community. It has built-in utilities for communicating with an underlying relational database. -
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Robocode championship manager
A robocode championship manager made using JavaFx
If you want to promote a robocode championship but do not have the right tools for this, that is the solution. -
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AcMus is a project on musical acoustics devoted to the development of models and computer tools for the study of room acoustics and focus on helping the investigation of issues related to the design, control and acoustic treatment of environments. AcMus has not been maintained for a few years now, but the code may still be useful. We consider the current repository to be at https://gitlab.com/ccsl-usp/acmus .
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PixelFlow
A Processing/Java library for high performance GPU-Computing (GLSL)
PixelFlow is a Processing library focused on advanced graphics and visual effects, offering an extensive suite of GPU-based tools for visual artists, researchers, and creative coders. It enables real-time simulation and rendering of complex effects such as fluid dynamics, reaction-diffusion systems, soft shadows, and more, all powered by GLSL shaders. Its modular structure allows for chaining and composing various visual effects easily, making it ideal for installations, performances, and visual experimentation. -
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KalypsoBASE is a Desktop-GIS built on Eclipse. It's focus lies on modelling gis data using GML Application-Schemata. Features contain generic dialogs based on GML, maps based on OGC's SLD, and other tools like a charting framework or API for timeseries
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Molecular Simulation Grid
Provides high performance computing power and state of the art tools
MoSGrid focuses on the configuration and provision of Grid services for molecular simulations and annotation of the results with metadata and their provision for data mining and knowledge generation. It is based on Liferay technology togethe with gUSE. -
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openmsr is a collection of tools around Instrumentation,Control and Automation ( ICA ). It runs under the following OS: Windows, Linux and Mac OSX. Ther are tools like digital simulation, object recognition, SoftPLC. Tools Messen,Steuern und Regeln
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Ship Lock Scheduling
Scheduling lockages at ship locks with several parallel lock chambers
This Java software includes algorithms of combinatorical optimization for the NP-hard offline ship lock scheduling problem. Solutions and performed computations can be displayed graphically. Besides, there is a framework for generating test instances and running these in parallel, as well as R/JGR code for statistical evaluation. Some tools for estimating the quality of calculated solutions will be further improved. Initially the software was developed within a project of TU Berlin regarding... -
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G4LTL-ST
Generating PLC programs from formal specifications
G4LTL-ST is a standalone tool and a Java library for automatically generating industrial control software (supporting IEC-61131-3 Structure Text) from LTL or extended logic specifications. See Tutorial.txt inside the package for step-by-step instructions. For technical demails, see CAV'14 paper "G4LTL-ST: Automatic Generation of PLC Programs". The old version (G4LTL; under BSD license) is available under file\arxiv. -
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NiCE
Modeling and Simulation made NiCE!
Notice! This project is now the Eclipse Integrated Computational Environment (ICE)! The new project page is www.eclipse.org/ice and the updated source code is at www.github.com/eclipse/ice . Contact: billingsjj <at> ornl . gov The NEAMS Integrated Computational Environment (NiCE) facilitates the flexible development, composition and use of a wide range of simulations, models and analysis tools for NEAMS integrated performance and safety codes. -
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FENNIX
Fast EXperimentation with Neural Networks
FENNIX is a simulator of artificial neural networks written in Java. It allows you to easily describe a complete simulation by using a simple text script language or by adding nodes to a tree of tasks by using the graphical used interface. Moreover, FENNIX is composed of pluggable tools that can be easily modified in order to add new functionalities to the simulator. -
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The bflow* Toolbox is an open source tool kit for business process management. The objective of bflow* is to explore new ways and scenarios for the development and use of modelling tools.
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safecap
Safecap Platform for improving railway capacity via formal modelling
The overall aim of the SafeCap project is to develop modelling techniques and tools for improving railway capacity while ensuring that safety standards are maintained. Useful links: Project homepage: http://http://safecap.co.uk/
