Search Results for "general morphological analysis"
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Showing 1108 open source projects for "general morphological analysis"
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FastQC
A quality control analysis tool for high throughput sequencing data
FastQC is a quality control analysis tool designed to spot potential problems in high throughput sequencing datasets. Its goal is to provide a simple way by which to check the quality of raw sequence data coming from high throughput sequencing pipelines. It does this by running a modular set of analyses on one or more raw sequence files in fastq or bam format. It then produces a report summarizing the results, and highlighting any areas where the library may appear unusual. This should then... -
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DataEase
Data visualization analysis tool
An open source data visualization analysis tool available to everyone. DataEase is an open-source data visualization analysis tool that helps users quickly analyze data and gain insight into business trends, so as to achieve business improvement and optimization. DataEase supports rich data source connections, can quickly create charts by dragging and dropping, and can easily share with others. Supports rich chart types (Apache ECharts / AntV), supports drag-and-drop method to quickly create... -
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SonarQube
Continuous inspection
SonarQube empowers all developers to write cleaner and safer code. Thousands of automated Static Code Analysis rules, protecting your app on multiple fronts, and guiding your team. Catch tricky bugs to prevent undefined behavior from impacting end-users. Fix vulnerabilities that compromise your app, and learn AppSec along the way with Security Hotspots. Make sure your codebase is clean and maintainable, to increase developer velocity! We embrace progress - whether it's multi-language... -
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SpotBugs
A tool for static analysis to look for bugs in Java code
SpotBugs is a program that uses static analysis to look for bugs in Java code. It is free software, distributed under the terms of the GNU Lesser General Public License. SpotBugs is a fork of FindBugs (which is now an abandoned project), carrying on from the point where it left off with the support of its community. Please check the official manual for details. SpotBugs requires JRE (or JDK) 1.8.0 or later to run. -
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Code Quality and Security for Java
SonarSource Static Analyzer for Java Code Quality and Security
Hundreds of unique rules to find Java bugs, code smells & vulnerabilities. Sonar static analysis helps you build and maintain high-quality Java code. Covering popular build systems, standards and versions, Sonar elevates your coding game while keeping vulnerabilities at bay. With each Java version, we create dedicated rules so you learn shiny, new features and avoid pitfalls. Consistently find tricky, hard-to-spot issues in your regular expressions. Allow you to effortlessly repair your Java... -
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GrimAC
Fully async, multithreaded, predictive, open source, 3.01 reach
GrimAC is an open-source anticheat system designed to detect and prevent cheating on Minecraft multiplayer servers through predictive simulation and advanced movement analysis. The project uses a simulation-based detection engine that recreates player movement and physics in order to identify discrepancies between legitimate gameplay and modified client behavior. By analyzing how players move, interact with the world, and send network packets to the server, Grim can detect a variety of... -
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Kodezi Chronos
Kodezi Chronos is a debugging-first language model
Kodezi Chronos is a research project focused on developing a specialized language model designed specifically for debugging software and understanding large code repositories. Unlike general-purpose language models that focus primarily on code generation, Chronos is built to diagnose and repair bugs by analyzing complex relationships across files within a codebase. The project introduces architectural techniques such as Adaptive Graph-Guided Retrieval, which allows the system to navigate... -
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OpenGXT - Geopatial Analysis Tools
Spatial Statistics Libraries & Tools for GeoTools, GeoServer, uDig
The goal of this project is to provide a spatial statistics tools for Geotools, Geoserver WPS, uDig Statistics Toolbox. #. Online Documentation - http://opengxt.mangosystem.com/ #. GeoTools -Download gt-process-spatialstatistics-xx.x.jar file #. GeoServer - Download GeoServer-Extension-OpenGxT-x.xx.x.zip - Unzip and copy two files to the WEB-INF/lib directory of the GeoServer installation. - Restart GeoServer #. uDig 2.0.x Plugin Installation - Name: Spatial... -
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Doxygen is a JavaDoc like documentation system for C++, C, Java and IDL.
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ProStack
ProStack - a platform for image processing and analysis
ProStack - a platform for image processing and analysis. It implements various image processing methods as separate modules, that can be joined in a complex image processing scenario by use of a graphical user interface. RPMs are available at https://build.opensuse.org/project/repositories/home:mackoel:compbio -
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HEALPix
Data Analysis, Simulations and Visualization on the Sphere
Software for pixelization, hierarchical indexation, synthesis, analysis, and visualization of data on the sphere. Please acknowledge HEALPix by quoting the web page http://healpix.sourceforge.net (or https://healpix.sourceforge.io) and publication: K.M. Gorski et al., 2005, Ap.J., 622, p.759 Full software documentation available at https://healpix.sourceforge.io/documentation.php Wiki Pages: https://sourceforge.net/p/healpix/wiki/Home Exchanging Data with HEALPix (in FITS files):... -
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ProM is the comprehensive, extensible framework for process mining. Process Mining deals with the a-posteriori analysis of (business) processes using enactment logs.
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JAGS is Just Another Gibbs Sampler. It is a program for the statistical analysis of Bayesian hierarchical models by Markov Chain Monte Carlo.
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In addition to RPKM (Reads Per Kbp per Million reads) values, RACKJ computes read counts for exons and splicing events. In so doing, it is feasible to compare two samples and identify genes with most significant difference in exon(splicing)-level.
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OmegaT - multiplatform CAT tool
The free computer aided translation (CAT) tool for professionals
OmegaT is a free and open source multiplatform Computer Assisted Translation tool with fuzzy matching, translation memory, keyword search, glossaries, and translation leveraging into updated projects. -
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Java Modelling Tools is a suite of scientific tools for performance analysis and modelling using queueing theory and colored stochastic Petri nets. Models are solved either with analytical, asymptotic or simulation methods; workload characterization tools are also included in the suite. See the project website for more details: http://jmt.sf.net
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An easy to use Java program that allows you to digitize data points off of scanned plots, scaled drawings, or orthographic photographs. Includes an automatic digitization feature that can automatically digitize many types of functional data.
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chessPDFBrowser
Chess application whichs allows working with chess PDF books and PGNs.
Chess application which allows working with PDFs and PGNs. You can work with the chess games of the PDF and edit their tree of variants. Graphical environment. Standard PGN TAGs. PGN comments. Ocr like (Fen string detection from chess board position images). Connection to Uci chess engines (like stockfish). Position analysis, full game analysis. You can now play games against uci engines. pdf2pgn command line command included. Detailed documentation. Multilanguage... -
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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NGSEP
NGSEP (Next Generation Sequencing Experience Platform)
NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering,... -
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Premium Markets
Premium Markets is an automated financial technical analysis system.
Premium Markets is an automated financial technical analysis system. With Premium Markets you can edit and create your own indicators as a composition of more than a hundred common technical analysis functions. It implements a graphical environment for monitoring financial technical analysis of the main stocks and shares markets and currencies. The standalone application includes a full integration of ta-lib C/C++ libraries. Be aware that the provided App available for download may... -
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CODERU
A code quality tool to enforce structural quality
CODERU is a java code quality tool to enforce good structure in respect to packages and therefore modules dependencies. CODERU is an achronym and stands for Common Dependency Rules. The CODERU-rules rely on reserved package names and the allowed dependency rules between them expressed in a general way. Unlike other tools forcing you to define allowed or disallowed individual package dependencies CODERU is based on a fixed set of general rules. The dependencies between packages need... -
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NOTE THAT THE SOURCE CODE AND ISSUE TRACKER HAVE NOW MOVED TO GITHUB. FIND US AT https://github.com/GateNLP/ GATE (General Architecture for Text Engineering) is an architecture, framework and development environment for developing, evaluating and embedding Human Language Technology. See http://gate.ac.uk for full details.
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detectproj
Automated detection of the unknown early map projection
New scientific software supporting the automated detection of the early map projection and its parameters. Useful for studying and analysis of different kinds of maps with the lack of information about the map projection. The analysis is based on the minimization of residuals between control points on the early and current reference maps. Designed for cartographers as well as for enthusiasts. Available free of charge. The awareness of the map projection is primarily important... -
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mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
