Search Results for "research database" - Page 5
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Showing 910 open source projects for "research database"
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This project proposes a virtual laboratory for social scientists interested in the modelling, analysis and behavioral simulation of power relationships within organizations and more generally in systems of collective action. This software is grounded on the works lead by Sibertin-Blanc and Roggero on the formalization of the Sociology of Organised Action [Crozier and Freidberg]. Visit the homepage of the project on soclabproject.wordpress.com for tutorials, examples and further...
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Applications to support the efficient capture of data from natural science collections specimens (particularly entomological collections), by facilitating pre-capture of data reflecting the storage structure of the collection, imaging of the specimens to separate data capture from specimen handling, and community sourcing transcription of hand written label data. Designed and written by a team at the Museum of Comparative Zoology. Includes a PreCapture barcode application refactored from...
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Virtual Cell
Former home of the Virtual Cell platform (VCell), see http://vcell.org
This project and all source code has moved to GitHub, see https://github.com/virtualcell -
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An open source workbench for chemo- and bioinformatics built on the Eclipse Rich Client Platform (RCP).
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Priority Estimation Tool (AHP)
PriEsT is a decision making tool for Analytic Hierarchy Process (AHP).
Priorty Estimation Tool (PriEsT) is a decision analysis tool. You can use it for ranking the options you have, or alternatively, you may use it for resource allocation (budgeting) problems. In PriEsT, you enter a list of available options and then define your criteria for prioritization. After defining criteria, PriEsT allows you to enter your judgements against each criterion, which are then used to calculate the final ranking (or weights). Please cite this if you find it... -
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Coherent Logic World Bank Client
Java client API for accessing economic data from the World Bank
***** WARNING ***** The delivery of 1.0.2-RELEASE of this framework will be the final source code commit that will be made on SourceForge; all further updates can be found at the following address: https://bitbucket.org/CoherentLogic/coherent-logic-world-bank-client/ ***** WARNING ***** The World Bank Client is a Java-based internal domain-specific language (DSL) for accessing Economic Data from the World Bank web services complements of the World Bank. The API is designed to... -
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Makumba
Moved to GitHub: https://github.com/makumba
Makumba helps you rapidly develop data driven web applications. Provides a custom JSP taglib as a main interface, but leaves API open for advanced access. It is implemented in Java. Moved to GitHub: https://github.com/makumba -
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MoRe4ABM
Managing Ongoing RElationships for Agent-Based Modelling
The purpose of MoRe4ABM - Managing Ongoing RElationships for ABM - is to support representing and analysing social networks in agent-based modeling. The library provides a large number of network generators and a comprehensive framework for network and node level measures. It integrates well with Repast Simphony and uses the JUNG library. More4ABM furthermore supports initialisation of geographically explicit networks using GIS. -
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Coherent Logic FRED Client
Java client API for accessing the FRED web services
***** WARNING ***** The delivery of the 1.0.3-RELEASE of this framework will be the final source code commit that will be made on SourceForge; all further updates can be found at the following address: https://bitbucket.org/CoherentLogic/coherent-logic-fred-client/ ***** WARNING ***** The FRED Client is a Java-based internal domain-specific language (DSL) for accessing the Federal Reserve Economic Data (FRED) web services complements of the Federal Reserve Bank of St.... -
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BioDWH is a bioinformatics data warehouse software kit that integrates biological information from multiple public life science data sources into a local RDBMS. It provides up-to-date integrated knowledge, platform and database independence.
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The Virtual Math Teams (VMT) Project (vmt.mathforum.org) at the Math Forum enables K-12 math collaborative learning, professional development of educators, & group cognition research. VMT is now integrated with GeoGebra (http://www.geogebra.org/).
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Penguin Nest Picture Analyser
Penguin Nest Camera Analyser - program for aiding the counting of peng
Penguin Nest Camera Analyser - program for aiding the counting of penguins in images created by automated nest monitoring cameras. -
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Visualization of Protein-Ligand Graphs
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/ -
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GNomEx
A Genomic LIMS and Data Repository
Our source code is now on GitHub: https://github.com/hci-gnomex/gnomex. Please refer to GitHub for the latest code. GNomEx is Genomic LIMS and Data Repository. It holds annotated experiments and downstream analysis and serves data tracks to popular genome browsers such as IGB, IGV, and UCSC genome browser. The LIMS handles all aspects of the experiment from order through results delivery. Experiment platforms supported include Illumina HiSeq, MiSeq, iScan, ABI Sanger sequencing,... -
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TLSBench
A tool for benchmarking the TLS performance of Cloud database systems.
TLSBench is a tool for benchmarking the performance of Transport Layer Security (TLS) in cloud storage systems / cloud database systems like Apache Cassandra, Apache HBase, and Amazon's DynamoDB. This tool is built for research purposes. A paper which describes the general benchmarking approach and some experiments is available here: http://www.aifb.kit.edu/images/5/58/IC2E2014-Performance_Overhead_TLS.pdf. -
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CCKDM
Concern Mining
This is a tool for concern mining which uses a KDM model as input and the output is the same model with annotated concerns. It uses a Concern Library and a modified String Clustering K-means algorithm with Levenshtein metric to cluster the strings. -
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Limpopo is a library for MAGE-TAB parsing and validation that will read mage-tab files into an object model, and includes a plugin mechanism that is open and extensible for writing MAGE-TAB data to other data resources such as a database.
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This project is now upgraded as educational resource planning tool including LMS (learning management system). Now DEI, AVV K, IITR, NITH, AMU, JMI, IGNOU, SMVDU are partnering in this. Overall coordination is done by IIT Kanpur.
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Science & Engineering Inventory
Rediscover the Simplicity http://www.atgclabs.com/
Request new Lab Inventory feature or module and receive a free Single User version with new feature. Help us to improve Lab Inventory. We want to hear your feedback! https://www.atgclabs.com/products/li The Lab Inventory System is an innovative, easy to learn full-featured solution for research laboratories. You can quickly and easily upload your existing Excel based inventory and get started in minutes, manage laboratory inventory, place orders and keep track of them in one... -
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RDKit
Open-Source Cheminformatics and Machine Learning
A collection of cheminformatics and machine-learning software written in C++ and Python. NOTE: the RDKit source code and downloads are now in github: https://github.com/rdkit/rdkit The core algorithms and data structures are written in C++. Wrappers are provided to use the toolkit from either Python or Java. Additionally, the RDKit distribution includes a PostgreSQL-based cartridge that allows molecules to be stored in relational database and retrieved via substructure and... -
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Lab Inventory
Rediscover the Simplicity www.atgclabs.com
Request new Lab Inventory feature or module and receive a free Single User version with new feature. Help us to improve Lab Inventory. We want to hear your feedback! https://www.atgclabs.com/products/li The Lab Inventory System is an innovative, easy to learn solution for research laboratories. You can quickly and easily upload your existing Excel based inventory and get started in minutes, manage laboratory inventory, place orders and keep track of them in one place. Lab Inventory... -
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STON
Translator of SBGN PD and AF maps into Neo4j graph database.
STON, Sbgn TO Neo4j, is a Java-based framework that imports and translates metabolic, signalling and gene regulatory pathways presented in SBGN (Systems Biology Graphical Notation, http://www.sbgn.org) Process Description (PD) and Activity Flow (AF) languages to a graph-oriented format compatible with Neo4j (http://neo4j.com/). STON1.2 allows also to link common processes between two different PD maps. This framework uses two sets of libraries: LibSBGN and Neo4j... -
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EventB2SQL
Generate Java and PHP database apps from abstract Event-B models.
EventB2SQL is a Rodin plugin for generating database applications from abstract Event-B models. EventB2SQL generates code for four types of applications: * Java with MySQL backend (JDBC) * Java with SQLite backend (JDBC) * Java for Android with native SQLite backend * PHP with MySQL backend (PDO) EventB2SQL can translate abstract Event-B models that use features such as: * enumerated sets * variables of set and relation types * simultaneous assignment * set...
