Search Results for "log analysis tools" - Page 5
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Showing 397 open source projects for "log analysis tools"
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GUAJE FUZZY
Free software for generating understandable and accurate fuzzy systems
GUAJE stands for Generating Understandable and Accurate fuzzy models in a Java Environment. Thus, it is a free software tool (licensed under GPL-v3) with the aim of supporting the design of interpretable and accurate fuzzy systems by means of combining several preexisting open source tools, taking profit from the main advantages of all of them. It is a user-friendly portable tool designed and developed in order to make easier knowledge extraction and representation for fuzzy systems, paying... -
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oasis-genomics
Oasis Genomics cancer omics integration portal
OASIS is an application that enables complex analytical queries across somatic mutations; copy number changes (CNV); and gene expression data. OASIS has been built on top of the BIoMart frameworks and has been extended to incorporate unique tools and visualizations to facilitate analysis of complex cancer "Omics" datasets. -
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AppUse
Android Pentest Platform Unified Standalone Environment
AppSec Labs recently developed the AppUse Virtual Machine. This system is a unique, free, platform for mobile application security testing in the android environment, and it includes unique custom-made tools created by AppSec Labs. AppUse Pro v3 is now available in AppUse website: -
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An API for manipulating EDIF netlists in Java. We use this API to analyze netlists as a part of our FPGA reliability project. We intend to keep the API as general as possible to support other netlist analysis and manipulation activities. This material is based upon work supported by the National Science Foundation under Grant No. 0801876. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the...
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EXMARaLDA stands for "Extensible Markup Language for Discourse Annotation". It's a system of concepts, data formats and tools for the computer assisted transcription and annotation of spoken language, and the analysis of spoken language corpora. This project's source code has moved to https://github.com/Exmaralda-Org/exmaralda
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COAR-DMS
DMS for linux, C++ library, server, webUI , SOAP
COAR-DMS is document management system for 32/64 bit. linux. Acts as library, server and tools. Library features: - storage management, free pages recycling - transaction log - indexing: full text, tags, metadata, document attributes - inverted index - versioning, collaboration - document trees, trees versionning - folders - plugins for auth (PAM,LDAP), db, file types plugins - tags - metadata (key value pairs) - object level security, folders documents ACL, - unix like security (rwx), special authorities - from thousands to tens of billions of documents - dashboard (working copies, new documents) - electronic signs - search statement, syntax like SQL - multithreaded, multiprocess library, Servers: - native HTTP server (libmicrohttp) - SOAP server - WebDAV(planed) - Indexer Python API WebUI GWT, JSP, SOAP-API -
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Agilefant
The scalable open source tool for lean and agile project management
Agilefant is a simple but powerful web based tool for lean and agile project management. It is the most versatile open source solution of its kind today, with a rapidly growing user base of more than 10k users around the world in thousands of organizations. Based on more than ten years of solid scientific research within real world organizations, Agilefant's unique model scales from personal todo-lists to large-scale multi-team development and long-term product and portfolio... -
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scipion-xmipp
Image processing framework to integrate EM software packages.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated... -
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Golden Retriever-Image Retrieval Engine
Library and frontend engine for performing Image Retrieval tasks.
The GRire library is a light-weight but complete framework for implementing CBIR (Content Based Image Retrieval) methods. Currently, the main objective of the project is the implementation of BOVW (Bag of Visual Words) methods so, apart from the image analysis tools, it offers methods from the field of IR (Information Retrieval), e.g. weighting models such as SMART and Okapi, adjusted to meet the Image Retrieval perspective. The purpose of the project is to help developers create and distribute their methods and test the performance of their BOVW systems in actual databases with minimum effort and without having to deal with every aspect of the model. ... -
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OpenIMAJ: The Open toolkit for Intelligent Multimedia Analysis in Java. OpenIMAJ contains a large collection of pure-Java classes for analysing multimedia documents, from tools for extracting image features, to tools for analysing web pages.
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Chordalysis
Log-linear analysis (data modelling) for high-dimensional data
===== Project moved to https://github.com/fpetitjean/Chordalysis ===== Log-linear analysis is the statistical method used to capture multi-way relationships between variables. However, due to its exponential nature, previous approaches did not allow scale-up to more than a dozen variables. We present here Chordalysis, a log-linear analysis method for big data. Chordalysis exploits recent discoveries in graph theory by representing complex models as compositions of triangular structures, also known as chordal graphs. ... -
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular pipeline, called iMir, integrating multiple open source modules and resource in an automated workflow, devising different statistical approaches to analyze data rigorously. iMir comprises also a Graphical User Interface (GUI), so that the pipeline is particularly suited for biologist and early stage bioinformaticians and produces both graphics and text outputs. -
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openSEQ
NGS compute distro proloaded with pipeline analysis software
Forked Ubuntu 14.04 minimal install with XOrg and FluxBox desktop environment for web-based pipeline construction and job submission. HOWTO: 1) Set VM network settings to a bridged adapter type. 2) Load VM to client 3) From host: $ ssh -X ubuntu@<foobar> 'firefox && butterfly.server.py --unsecure' --- passwd = 616287xx 5) or ssh into host with X forwarding, and type runme This will launch an X-session of Firefox on the client, which will then be forwarded to the host. The... -
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XBM
eXtensible Behavioral Modeling (XBM) framework
Impact Computing's eXtensible Behavioral Modeling (XBM) framework is an open, flexible and customizable platform providing integrated access to an extensible hybrid combination of modeling, simulation and visualization tools. -
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chbGUI
Free Linux backup tool *
License: FREEWARE (GNU General Public License). Automates backup creation using Unix tools. Configurable using a friendly user interface. Create different backups based on templates that can be tailored to distinct needs. (*) Tested on Linux and Mac OS X but may run properly without modifications on other Unix platforms that have the Bourne shell (/bin/sh) and a Java (1.6) or higher runtime environment. See documentation provided in the package for more details. Current... -
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CMIS Input plugin for Pentaho
Allows querying Content Management Systems that use the CMIS.
...Imagine using the information extracted for statistical purposes, for creating reports and, more generally, to analyse your document archives in a way unthinkable until now with the current tools available. All this is possible within the Pentaho Suite, the Open Source Business Intelligence platform, which is useful to the extraction and analysis of structured and semi-structured data. With this goal (the extraction and analysis of data) has been designed and developed the CMIS Input plugin for Pentaho Data Integration (Kettle) that allows querying Content Management Systems that use the CMIS interoperability standard. ... -
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Sanity4J simplifies running multiple code analysis tools on Java projects on an ad-hoc basis. It provides a single entry point to run the tools and produces a consolidated report, which presents all findings in an easily accessible format. Homepage: https://sanity4j.github.io/ Project page: https://github.com/Sanity4J/Sanity4J/
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picard
A set of tools for working with high-throughput sequencing data
A set of tools (in Java) for working with next generation sequencing data in the SAM/BAM format. Note that development has moved to GitHub at https://github.com/broadinstitute/picard and support is available on the GATK forum at http://gatkforums.broadinstitute.org/categories/ask-the-team -
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Source Navigator NG is a source code analysis tool. With it, you can edit your source code, display relationships between classes and functions and members, and display call trees. You can navigate your source code and easily get to declarations or implementations of functions, variables and macros (commonly called "symbols") which helps you discovering and mapping unknown source code for enhancement or maintenance tasks.
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EMFTrace
Repository for dependencies between software design artefacts
EMFTrace extends the EMFStore repository by elicitating dependencies between related models of different modeling and programming languages. The explicit recording and modeling of different types of dependencies as traceability links shall support evolutionary changes by impact analysis, early evaluation of quality flaws, and better comprehension. It is an open source project to support the practical application of research results regarding development methods for evolution of software architectures and for software reengineering. EMFStore is used for integrating models and source code from different tools and vendors, while EMFTrace provides means for dependency detection, dependency visualization, and change impact analysis. -
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ijTools
A set of plugins and tools for ImageJ (Image processing sofware)
A collection of plugins and tools for the ImageJ software. Contains modules for image filtering (directional filtering), segmentation, analysis (perimeter estimation, geodesic diameter...), or visualisation (image overlay). -
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Flamingo Project
Workflow Designer, Hive Editor, Pig Editor, File System Browser
Flamingo is a open-source Big Data Platform that combine a Ajax Rich Web Interface + Workflow Engine + Workflow Designer + MapReduce + Hive Editor + Pig Editor. 1. Easy Tool for big data 2. Use comfortable in Hadoop EcoSystem projects 3. Based GPL V3 License Supporting Pig IDE, Hive IDE, HDFS Browser, Scheduler, Hadoop Job Monitoring, Workflow Engine, Workflow Designer, MapReduce. -
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The BioNLP UIMA Component Repository provides UIMA wrappers for novel and well-known 3rd-party NLP tools used in biomedical text prosessing, such as tokenizers, parsers, named entity taggers, and tools for evaluation.
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Graphical Grammar Studio
An user friendly grammar tool for natural language processing tasks
Full documentation with tutorials is included in the download package. Graphical Grammar Studio is a tool for applying grammars which behave as words acceptors/consumers and annotators. GGS grammars can be used to find and annotate sequences of words which respect certain conditions, in a given input. Its purpose is for creating NLP tools like phrase chunkers, named entity finders, pronoun co-reference solvers etc. A grammar is represented by a state machine which can be visualized, edited... -
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TriageTools
Tools for partitioning and prioritizing fastq data
TriageTools is a collection of tools for partitioning raw data (fastq reads) from high-throughput sequencing projects. The tools are designed for basic data management as well for prioritizing analysis of certain subsets. The project wiki contains usage information.