Showing 5724 open source projects for "engineering"

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  • 1
    SEWOL: Security-oriented Workflow Lib

    SEWOL: Security-oriented Workflow Lib

    Java Library for workflow handling

    SEWOL provides support for the handling of workflow traces. It allows to specify the shape and content of process traces in terms of entries representing the execution of a specific workflow activity. Currently it supports plain text, Petrify, MXML and XES log file types. In order to specify security-related context information, SEWOL provides access control models such as access control lists (ACL) and role-based access control models (RBAC). SEWOL uses and encloses the following...
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  • 2

    Protein Contact Matrix Generator

    Command line application to generate contact matrix from proteins (3D)

    A protein contact matrix is 2D representation of the distances between amino acid residues in a 3D protein structure. Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps). Contact Maps can be used to understand...
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  • 3
    zet-evacuation
    Moved to GitHub. This is the old, unmaintained source code. https://github.com/zet-evacuation A tool to model and simulate evacuation situations in buildings using flows on graphs and cellular automatons. It allows visualization of both models in OpenGL.
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  • 4
    Java ray tracing library. Intended for optic system design, not intended for rendering. Handles generic surfaces (cone, sphere, cylinder, user-defined) including Fresnel or micro-structured material; handles reflection and refraction.
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  • 5
    ASTRA-project
    Supporting software tools for mediated interpersonal awareness. Service oriented architecture, tools and applications that support communities to appropriate Pervasive Awareness applications. See http://www.astra-project.net/ for details.
    Downloads: 1 This Week
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  • 6

    ASM

    Java API for WS-Pgrade/gUSE

    Users of WS-PGRADE define their applications as workflows. They can share their applications using its internal repository solution. Hence users can import, parameterize and execute workflows developed by others. Using this idea, Application Specific Module (ASM) offers a Java API for all of these functionalities to develop Application Specific Portlets fitting to the end-users' needs and hiding all the complex mechanisms of the underlying system. Science Gateways developed using ASM are...
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  • 7
    XMLPipeDB is a suite of tools for building relational databases from XML sources with minimal manual processing of the data. While the applicability is general, our motivation was to facilitate the management of biological data from different sources.
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  • 8
    Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools. The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF. For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877,...
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  • 9

    Drug Extraction

    Drug name extraction

    Drug name recognition and normalisation/grounding to DrugBank ids and standard names. Package provides 2 taggers: 1. DrugTagger - CRF-based with DrugBank presence feature (see feature set for details). 2. DrugnameGazetteer - gazetteer/dictionary-based. Dictionary created from DrugBank.ca database. Both taggers include grounding/normalisation to DrugBank ids and standard names. Feature set: Word, Word-1, Word+1, Word-1_Word, Word_Word+1, DrugBankPresence, POS DrugBankPresence...
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  • 10
    JIPT - Java Image Processing Toolkit
    This is an Image Processing toolkit written in Java. The source code is intended to help you understand processes such as Color Inversion, Edge Detection, Fourier Transform, Morphological process, Laplacian Sharpening, Gaussian Noise Adding, and hist
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  • 11
    Software Engineering Environment(SEE) is a general frame to customize and manage information. The default information set is the data for software development. Users can manage tables like Problem Reports, Change Requests, Working Log and Plans, Testing Cases, etc. It is written in servlet and data are saved in XML. Any data structures can be added and customized.
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  • 12
    This is software for display geographical maps, written on C++. It's small and simple library, which allow to use it on PDA (like Palm and Windows Mobile) and desktop.
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  • 13

    SuRankCo

    Supervised Ranking of Contigs in de novo Assemblies

    SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome yet. For more details about SuRankCo and its functioning, please see "SuRankCo: Supervised Ranking of Contigs in de novo Assemblies" Mathias Kuhring, Piotr Wojtek Dabrowski, Andreas Nitsche and Bernhard Y....
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  • 14

    SLlib

    Java library for Subjective Logic operators

    Java library for Subjective Logic operators
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  • 15

    CONMAP

    Geobody connectivity analysis tool in geosciences. New version: 2.0

    CONMAP is a console program to aid in geobody connection analysis in geosciences. It accepts input and outpts results in GEO-EAS (GSLIB) format for easy interoperability with most geoscience softwares. To get help in usage, simply run the program without arguments. CONMAP is a Java 1.7 program. Open a command prompt, go to the directory where you download CONMAP.jar and enter the command "java -jar CONMAP.jar <arguments>" (without quotation marks) to run the program. Geobody...
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  • 16
    JPOP is a pure java parallel optimization package based on the Optimization Java Package. It supports analytical gradients and Hessians for non-linear optimization. JPOP is based on uncmin in Fortran but employs java arrays and object oriented code.
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  • 17
    SBSI
    SBSI (Systems Biology Software Infrastructure) is a suite of tools for systems biology, such as parallelized numerical algorithms, and a Java, Eclipse RCP based client for visualizing results, running simulations, and integrating SBML based plugins.
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  • 18
    Taxy is a tool for browsing and quering data organized as a taxonomy. Through the use of plugins it allows to connect to different data sources, such as the NCBI species taxonomy or the catalogue of biomedical services of the EU project ACGT.
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  • 19

    S1TBX

    Sentinels Application Platform (SNAP)

    ESA Sentinel Toolbox for Earth Observation
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  • 20
    Open Information Integration
    Open Information Integration Tool Suite (Open II) is used by analysts and programmers to accelerate data integration and harmonization across organizations. OpenII has a neutral schema repository for browsing and comparing all sorts of data models. OpenII is built as a Rich Client Platform Application on top of Eclipse 3.x. Developers need to download Eclipse, install the RCP support, the Fatjar plugin and the Delta Pack in one of the 3.x flavors. Release Notes Release Date: Jan...
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  • 21

    UNSW Metadata Stores (ResData)

    An institutional research metadata management repository.

    ResData is an institutional metadata repository to facilitate effective management, discovery and sharing of institutional research data collections. It integrates with institutional enterprise systems, such as HR and Grant management systems to facilitate re-use of existing information, such as People and Project records. ResData has been developed by the Library Repository Services, University of New South Wales. The work was supported by the Australian National Data Service (ANDS)...
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  • 22
    SterHemel

    SterHemel

    Volg de gebeurtenissen aan de sterrenhemel op je mobiel

    De gebeurtenissen aan de sterrenhemel in Nederland en België op je mobiel! SterHemel toont in een handomdraai wat er aan de sterrenhemel te zien is met het blote oog, een verrekijker of een kleine telescoop. De app is bedoeld voor waarnemers in Nederland en België en is daarom in het Nederlands/Vlaams gemaakt. De app toont de gebeurtenissen aan de sterrenhemel onder andere in de vorm van een astrokalender, de tab "Vannacht aan de hemel" met inforatie over Zon, Maan planeten en...
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  • 23
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  • 24
    Gene Studio is a free tool for modelling of DNA manipulation. It will allow to work with vectors, to design primers, to clone molecules and provide user friendly intewrface.
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    Downloads: 32 This Week
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  • 25
    SoftSmithy is a platform for open source Java developers. The core is an extended Java utility library. In the future there may be open source software build on this library.
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