Search Results for "research database" - Page 4
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Showing 910 open source projects for "research database"
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Experience-Based Language Acquisition is a computational model of human language acquisition. It is written entirely in Java and currently acquires a protolanguage of nouns and verbs language based on visual perception.
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Madara
Middleware for distributed applications
The purpose of the project is to develop a portable programming framework that facilitates distributed and multi-threaded programming for C++, Java, and Python. MADARA was originally developed as an agent-based middleware specifically for real-time, distributed artificial intelligence, but is now more general purpose for distributed timing, control, knowledge and reasoning, and quality-of-service. MADARA is composed of several tools and middleware, and the main entry point into the system... -
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Rhea is a reaction database, where all reaction participants are linked to the ChEBI database (Chemical Entities of Biological Interest). Rhea provides built-in validations that ensure both mass and charge balance of the reactions.
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Network software for annotation and quality control of distributed data. Supported by NSF: DBI 0646266 and NSF: DBI 0960535. http://wiki.filteredpush.org
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GNAT
GNAT recognizes gene names in text and maps them to NCBI Entrez Gene
GNAT is a BioNLP/text mining tool to recognize and identify gene/protein names in natural language text. It will detect mentions of genes in text, such as PubMed/Medline abstracts, and disambiguate them to remove false positives and map them to the correct entry in the NCBI Entrez Gene database by gene ID. March 2017: We started to upload GNAT output on Medline. See files/results/medline/. -
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Jena is Java toolkit for developing semantic web applications based on W3C recommendations for RDF and OWL. It provides an RDF API; ARP, an RDF parser; SPARQL, the W3C RDF query language; an OWL API; and rule-based inference for RDFS and OWL. Jena is now an Apache project: http://jena.apache.org/
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Genetic Oversampling Weka Plugin
A Weka Plugin that uses a Genetic Algorithm for Data Oversampling
Weka genetic algorithm filter plugin to generate synthetic instances. This Weka Plugin implementation uses a Genetic Algorithm to create new synthetic instances to solve the imbalanced dataset problem. See my master thesis available for download, for further details. -
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Specify Software
Biodiversity Database Platform
Specify is a biological collections and species occurrence database management platform for zoological museums, herbaria and other biodiversity specimen repositories. Specify is supported by grants from the Division of Biological Infrastructure, U.S. National Science Foundation and the State of Kansas. A web browser application, Specify 7, is available on GitHub. In 2015, 450 biological collections worldwide use Specify Software for collections data management. An iPad app, Specify Insight... -
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JabRef
JabRef is a graphical application for managing bibliographical data
JabRef is a graphical application for managing bibliographical databases. JabRef is designed specifically for BibTeX bases, but can import and export many other bibliographic formats. JabRef runs on all platforms and requires Java 1.8 or newer. -
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Jamberoo (former JMolEditor) is a library of algorithms for structural Computational Chemistry implemented in the Java programming language. The Jamberoo classes can be integrated into other Java applications.
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The KReator project is a collection of software systems, tools, algorithms and data structures for logic-based knowledge representation. Currently, it includes the software systems KReator and MECore and the library Log4KR: - KReator is an integrated development environment (IDE) for relational probabilistic knowledge representation languages such as Bayesian Logic Programs (BLPs), Markov Logic Networks (MLNs), Relational Maximum Entropy (RME), First-Order Probabilistic...
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DataCleaner
Data quality analysis, profiling, cleansing, duplicate detection +more
DataCleaner is a data quality analysis application and a solution platform for DQ solutions. It's core is a strong data profiling engine, which is extensible and thereby adds data cleansing, transformations, enrichment, deduplication, matching and merging. Website: http://datacleaner.github.io -
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xinco [eXtensibe INformation COre] is a powerful Web-Service based Information and Document Management System (DMS) for files, text, URLs and contacts, featuring ACLs, versioning, full text search, an FTP-like client (easy install, J2EE+MySQL/PostgreSQL)
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UBA-PVS
UBA Probenverwaltungssystem (Specimen Management System)
This software was implemented by the Laboratory & Information Technology Department at the Fraunhofer Institute for Biomedical Engineering IBMT (St. Ingbert, Germany) as a contract work for the German Federal Environmental Agency. Initially, the application manages specimens with their data in a repository that are collected in the German Environmental Survey (GerES) carried out by the German Federal Environment Agency (Umweltbundesamt – UBA). Version 1.0 of the application was released in... -
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MMOWGLI
Massive Multiplayer Online Wargame Leveraging the Internet
MMOWGLI, the Massive Multiplayer Online Wargame Leveraging the Internet, enables collaborative thinking and innovation. Players build Ideas and Action Plans together on the Web. Play the game, change the game! MMOWGLI is a message-based game to encourage innovative thinking and collaboration by many people, connected via the Web. It has been used to study a number of topics... starting in 2021 and beyond. Years of funded support by Office of Naval Research (ONR) and more than a... -
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Algorithm Database
Efficient Algorithms implemented in Java
The Aim of this project is to provide a collection of reusable Algorithms which can be used effectively in different scenarios. Algorithm implementations are in Java. Objective here is to implement algorithms which should be more efficient than the JDK implementation and also to create a platform for the researchers who works on Data Mining, Encryption algorithms, ect.. to collaborate and contribute to this project. -
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JBioFramework
Growing suite of proteomics simulations for educational purposes
JBioFramework (JBF) is a set of two different chemical separations simulations (2D Electrophoresis and Mass Spectrometry) that are frequently used in chemistry, biochemistry and proteomics research. It is written in the Java programming language and will run on any and all systems that have the JVM installed. As we continue to develop the software over the coming months/years and attempt to quantify the success of our efforts with testing and reviews, user input is very important. Please... -
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GeOxygene aims at providing an open framework which implements OGC/ISO specifications for the development and deployment of geographic (GIS) applications. It is a open source contribution of the COGIT lab. at the IGN (the French National Mapping Agency).
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FiMaLib
a financial math library and financial market data database
This project should combine a financial mathematics library with an underlying financial market database (and a set of other tools), which could be used by financial institutions for their financial market data needs as well as by students for research works. -
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CloudMIG Xpress
Find the best suited cloud provider and deployment for your software
To reduce resource over and under-provisioning, software systems can be migrated to IaaS and PaaS-based cloud environments. However, aligning and optimizing existing software systems for a cloud computing foundation often involves substantial reengineering activities or at least an elaborated configuration during the migration. There exist various challenges that have to be addressed, for example, systematically comparing cloud environment candidates, checking the conformance with... -
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Android DvxWifiScan - Wifi scanner
Wifi scanning and wifi control tool for Android 4.2.2 and more.
DvxWifiScan is a wifi 802.11x scanning application for Androïd 4.x and more. It allows you to : - Launch a one-time scan of all wifi network SSIDs around - Launch a wifi access points loop scan that writes its result on screen, in a file at the root of the sdcard (/sdcard/dvxwifiscan-scan.log), and in an embedded sqlite database (default system storage). - Stop and start the wifi interface + get the MAC address of the connected interface - Get the LAN IP address currently in use... -
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Open source JDBC 3.0 type 4 driver for Microsoft SQL Server (6.5 up to 2012) and Sybase ASE. jTDS is a complete implementation of the JDBC 3.0 spec and the fastest JDBC driver for MS SQL Server. For more information see http://jtds.sourceforge.net/
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SmartRoot
Semi-automated root image analysis software
SmartRoot is a semi-automated image analysis software which streamlines the quantification of root growth and architecture for complex root systems. The software combines a vectorial representation of root objects with a powerful tracing algorithm which accommodates to a wide range of image source and quality. The software supports a sampling-based analysis of root system images, in which detailed information is collected on a limited number of roots selected by the user according to... -
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Colloquium QDA
A free and open source qualitative ethnographic interview coding tool.
Colloquium QDA is a tool for custom coding and analyzing qualitative ethnographic interviews. To run, make sure you first have JRE 8 or later installed (http://www.oracle.com/technetwork/java/javase/downloads/). Colloquium QDA is an open source cross-platform Java Swing app utilizing an embedded Java DB with Lucene integrated search. -
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easyrec is a recommender system that aims for easy integration of recommendations into web applications. It has a web based admin tool, and its recommendation engine is accessible through a REST API, providing methods like 'other users also bought'
