Search Results for "algorithm" - Page 4
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Showing 504 open source projects for "algorithm"
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BioPPSy
A biochemical property prediction system
Computationally predicts the pharmacokinetic properties of drug candidates using Quantitative Structure Property Relationships (QSPR) modelling. Assembles a set of tools and databases for predicting the physical properties of small molecules. The program models a given property's dependence on a collection of molecular and structural descriptors using a training set of molecules. Neural networks and support vector regression are available, as well as linear models. The models generated by... -
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Latin Square Toolbox
Generates Latin squares and counts their transversals
The Latin Square Toolbox contains software tools for efficiently generating Latin squares and counting their transversals with various user-configurable options. This open source release aims to help educate folks on Latin squares and their important applications to cryptography. This version contains three tools: 0. Latin Square Generator (LSG) 1. Latin Square Transversal Counter (LSTC) 2. Latin Square Property Checker (LSPC) -
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Format-Preserving Encryption
Format-Preserving Encryption Library for Java
...The FF1 and FF3 methods for format-preserving encryption are implementations of NIST Special Publication 800-38G, Recommendation for Block Cipher Modes of Operation: Methods for Format-Preserving Encryption. The FFX algorithm and A2 and A10 parameter sets are implementations of "The FFX Mode of Operation for Format-Preserving Encryption," by Mihir Bellare, Phillip Rogaway, and Terence Spies. For more information see the README.txt and package-info.java files in the source. -
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Genetic Oversampling Weka Plugin
A Weka Plugin that uses a Genetic Algorithm for Data Oversampling
Weka genetic algorithm filter plugin to generate synthetic instances. This Weka Plugin implementation uses a Genetic Algorithm to create new synthetic instances to solve the imbalanced dataset problem. See my master thesis available for download, for further details. -
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Recursive Directory Removal
Recursive Directory Removal
https://github.com/mhisoft/rdpro -
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OWL Machine Learning
Machine learning algorithm using OWL
Feature construction and selection are two key factors in the field of Machine Learning (ML). Usually, these are very time-consuming and complex tasks because the features have to be manually crafted. The features are aggregated, combined or split to create features from raw data. This project makes use of ontologies to automatically generate features for the ML algorithms. The features are generated by combining the concepts and relationships that are already in the knowledge base,... -
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WebService::UMLSKS::Similarity::Java
A measure of semantic relatedness between medical terms using Java
This is a Java implementation of HSO measure of finding semantic relatedness. The measure is applied to UMLS source vocabularies and is used to find relatedness between medical terms. This implementation uses same algorithm as WebService::UMLSKS::Similarity, a CPAN perl open source package. -
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EntOpt Layout
Relative entropy optimization network layout plugin
The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492 https://academic.oup.com/bioinformatics/article/35/21/4490/5475596 Our detailed Tutorial on the use of the plugin: https://suopte.com/entopt_2_1_tutorial_20200518.pdf A video about the version 2.1: http://suopte.com/entopt_2_1_tutorial_video.mp4 Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu. -
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A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
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Elements of Programming Interviews
Method stubs and test cases for Elements of Programming Interviews
...This book is also available in Python and C++. This repository contains solutions to problems from the book "Elements of Programming Interviews," focusing on interview preparation and algorithm practice. -
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jalicanto
Traveling Salesman Problem "window time based" aproximate solver
Time based Traveling salesman problem solver. Using iterated local search algorithm, implements xkick perturbation Programmed in Java. A class to use the TSP Suite(Thomas Weise, Raymond Chiong, J ¨org L¨assig, Ke Tang, Shigeyoshi Tsutsui, Wenxiang Chen, Zbigniew Michalewicz, Xin Yao, Benchmarking Optimization Algorithms: An Open Source Framework for the Traveling Salesman Problem. 2014.),is implemented. -
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Algorithm Database
Efficient Algorithms implemented in Java
The Aim of this project is to provide a collection of reusable Algorithms which can be used effectively in different scenarios. Algorithm implementations are in Java. Objective here is to implement algorithms which should be more efficient than the JDK implementation and also to create a platform for the researchers who works on Data Mining, Encryption algorithms, ect.. to collaborate and contribute to this project. -
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MCU Media Server
SIP Video Multiconference Media Server with WebRTC support.
REPOSITORY MOVED TO GITHUB!! https://github.com/medooze/media-server Video Multiconference Media Server with WebRTC support. Provide Multiconference and video broadcasting services to any SIP service. Supports VP8, H264, MP4V-ES, H263 and H263P, continuous presence, RTMP flash broadcasting, adhoc conferences, load balancing and administrative WEB interface. JSR309 driver implementation under development. . -
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SmartRoot
Semi-automated root image analysis software
SmartRoot is a semi-automated image analysis software which streamlines the quantification of root growth and architecture for complex root systems. The software combines a vectorial representation of root objects with a powerful tracing algorithm which accommodates to a wide range of image source and quality. The software supports a sampling-based analysis of root system images, in which detailed information is collected on a limited number of roots selected by the user according to specific research requirements. SmartRoot is an operating system independent freeware based on ImageJ and uses cross-platform standards (XML, SQL, Java) for communication with data analysis softwares. ... -
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Xamp
This is Xamp, a secure and platform independend media player.
This is Xamp, the next generation of a skinnable and platform independent media player which based on the Doppio media framework: https://sourceforge.net/projects/doppio. The player supports various pluggable video and audio formats. Xamp is primarily intend to run as a native executable but can also run as a Java player version working with Java 1.1 VM or above. To ensure the best user experience, the Java version of Xamp doesn't use the Java Media Framework, the high level part... -
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GUI Ant-Miner is a tool for extracting classification rules from data. It is an updated version of a data mining algorithm called Ant-Miner (Ant Colony-based Data Miner).
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MicroZip
Create,extract and encrypt ZIP,GZIP,TAR,BZIP2,TAZ files on Java mobile
...MicroZip allows you to extract selected files without extracting the whole ZIP archive. MicroZip also supports encrypted ZIP archives with both classic ZIP encryption and AES 256 encryption algorithm. -
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XML2CSV-Generic-Converter
Flatten XML into CSV to suit your mood
...I made it in order to extract data from big XML files and gather them in files more easily opened with a spreadsheet because I didn't find anything adapted to my needs over the Internet when I needed to (Java + truly generic + self-contained algorithm + Unix like command line options + efficiency). It is packaged as an auto executable Jar for convenient command line execution but might as well be interfaced directly by a Java class as part of a broader [yet non commercial] software. It handles attributes, repeated elements, and so on, and produces results which level up with what spreadsheets generate when they import native XML (at least in its most extensive execution mode). ... -
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tsp-problem-ga-aco-comparisson
Genetic Algorithm and Ant Colony to solve the TSP problem
This project compares the classical implementation of Genetic Algorithm and Ant Colony Optimization, to solve a TSP problem. It's possible to define the number of cities to visit , and also interactively create new cities to visit in a 2D spatial panel. A total distance is given for AG and ACO solution at end. -
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smartblob
tiny code, html webcam game or plug brain in each blob, java server
...I'm planning a huge multiplayer world, some blobs played by people holding a bendable loop game controller (tape a 1 meter cut of thick extension cord into a loop) in front of webcam and bend it to bend your blob on screen, and other blobs controlled by AI. This is a game for general AI research in a fun way people can do together. The physics and vision algorithm is half working in version 0.3.0. The gameplay is better experienced in 0.2 which is controlled with the mouse so you dont have enough freedom of movement compared to webcam. This small file contains its own source code including occamserver, a tiny general java server I built which I'll adjust to allow http streaming connections to stay open for faster ajax than a new web call each time. ... -
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Visualization of Protein-Ligand Graphs
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
...The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/ -
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Opt4J
Modular Java framework for meta-heuristic optimization
Opt4J is an open source Java-based framework for evolutionary computation. It contains a set of (multi-objective) optimization algorithms such as evolutionary algorithms (including SPEA2 and NSGA2), differential evolution, particle swarm optimization, and simulated annealing. The benchmarks that are included comprise ZDT, DTLZ, WFG, and the knapsack problem. The goal of Opt4J is to simplify the evolutionary optimization of user-defined problems as well as the implementation of arbitrary... -
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Flamethyst is a flame fractal renderer written in java. It generalizes the classical algorithm in several ways, and support most features of Apophysis .flame files.
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CCKDM
Concern Mining
This is a tool for concern mining which uses a KDM model as input and the output is the same model with annotated concerns. It uses a Concern Library and a modified String Clustering K-means algorithm with Levenshtein metric to cluster the strings. -
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This project consists of various implementations of the Graphplan algorithm. At the moment we have two implementations of Graphplan: * Emplan - A C++ implementation for Linux, Windows and MacOS X * JavaGP - A Java implementation
