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Showing 18 open source projects for "sector"
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Octave Forge
A collection of packages providing extra functionality for GNU Octave
Octave Forge is a central location for collaborative development of packages for GNU Octave. The Octave Forge packages expand Octave's core functionality by providing field specific features via Octave's package system. See https://octave.sourceforge.io/packages.php for a list of all available packages. GNU Octave is a high-level interpreted language, primarily intended for numerical computations. It provides capabilities for the numerical solution of linear and nonlinear problems, and... -
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ReViMS
ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy
Reconstruction and Visualization from Multiple Sections (ReViMS), an open-source, user-friendly software for automatically estimating volume and several other features of 3D multicellular aggregates (i.e., cancer spheroid, zebrafish, fruit fly). ReViMS requires a z-stack of 2D binary masks, obtained by segmenting a sequence of fluorescent images acquired by scanning the aggregate along the z axis, using a confocal or a light-sheet fluorescent microscope. It provides a number of tools... -
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ReViSP
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
Reconstruction and Visualization from a Single Projection (ReViSP) tool: a 3D volume rendering method we developed to reconstruct the 3D shape of multicellular spheroids, besides estimating the volume by counting the voxels (3D pixels) fully included in the 3D surface. ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements for running ReViSP from the source code: MATLAB 2020a and Image Processing Toolbox 11.1 or later... -
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F-Tracker3D
A software tool for tracking fluorescent cells in 3D
F-Tracker3D is acronym of "fluorescent cell tracker in three-dimensions". It is a software tool designed to track fluorescent cells using time-lapse z-stacks of images acquired with a confocal or light-sheet microscope. First, each single cell is tracked in 2D by using the maximum intensity projections of the z-stacks and CellTracker, the free open source software available at: www.celltracker.website. Then, the 3D track of each cell is obtained analysing the z-stacks and looking for the... -
Enterprise-grade ITSM, for every businessFreshservice is an intuitive, AI-powered platform that helps IT, operations, and business teams deliver exceptional service without the usual complexity. Automate repetitive tasks, resolve issues faster, and provide seamless support across the organization. From managing incidents and assets to driving smarter decisions, Freshservice makes it easy to stay efficient and scale with confidence.
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TraceX
MatLab App for calculating fitting isotopic exchange profile data
MatLab App for calculating fitting isotopic exchange profile data. Developed for measuring self-diffusivity and effective surface exchange coefficient of ion conducting materials. Requires MatLab image processing toolbox If you use this tool for you research, please cite my PhD thesis: Cooper, S. J. Quantifying the Transport Properties of Solid Oxide Fuel Cell Electrodes. (Imperial College London, 2015). @phdthesis{SJCooper2015, author = {Cooper, S. J.}, number =... -
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MORPHE
MORphological PHenotype Extraction
MORphological PHenotype Extraction (MORPHE) is a suite of automated image processing, visualization, and classification algorithms to facilitate the analysis of heritable and clonal red-to-green transitions that occurred during the growth of a colony. -
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GridMos
GridMos, mosaicing tool (in MATLAB) to improve cell counting.
Nowadays, the manual cell counting, performed directly by looking through the microscope’s oculars by using a tally counter and a hemocytometer, still is the gold standard method to count Live&Dead cells (Trypan Blue is typically used to stain the dead cells). However, performing the cell counting by tagging the cells in a steady image mosaic increases the reliability of the counts performed. Unfortunately, to build a mosaic of a hemocytometer's grid shows some problem due to the repeated... -
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matImage
An image processing and analysis library for Matlab
MatImage is a Matlab library for image processing and analysis in 2D and 3D. It contains more than 250 fonctions for image enhancement, filtering, analysis, or visualisation, as well as for creating basic test shapes. It is built as a complement of the Mathworks image processing toolbox (IPT). Project is being transfered to GitHub: http://github.com/dlegland/matImage -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited or... -
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IPRiT
Image Processing Ridge Tracker
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LAVA for AFM
Lloyd's Algorithm-based Volumetric Analysis for AFM Images
This MATLAB-based program enables analysis of AFM images. In particular, it allows the user to measure the volume of all distinguishable features in an image and to isolate and sort those particles. As the name implies, LAVA uses Lloyd's Algorithm, also known as k-means sorting, to identify a small set of volumes representative of the actual distribution of particle in the image. Although developed for determining feature volume, LAVA is also completely compatible with other types of... -
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Malimpa stands for MAtlab Library for IMage Processing and Analysis. It provides functions for 2D/3D grascale/color image creation, filtering, or measurement. It requires, and complements Matlab Image Processing Toolbox. Important notice: the project is now hosted in GitHub, https://github.com/dlegland/matImage
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DCTV
DUAL CONSTRAINED TV-BASED REGULARIZATION ON GRAPHS
Algorithms based on Total Variation (TV) minimization are prevalent in image processing. They play a key role in a variety of applications such as image denoising, compressive sensing and inverse problems in general. In this work, we extend the TV dual framework that includes Chambolle's and Gilboa-Osher's projection algorithms for TV minimization. We use a flexible graph data representation that allows us to generalize the constraint on the projection variable. We show how this new... -
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The purpose of this program is to teach a computer to classify plants via their leaves. You just need to input the image of a leaf(acquired from scanner or camera), then the computer can tell you what kind of plant it is.
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im-browser
MIB is a high-performance software package for image segmentation
Microscopy Image Browser (MIB) is a high-performance software package for advanced image processing, segmentation and visualization of multi-dimensional (2D-4D) light and electron microscopy datasets. Home page: http://mib.helsinki.fi
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