Search Results for "tool" - Page 2
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Showing 65 open source projects for "tool"
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ReViSP
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
Reconstruction and Visualization from a Single Projection (ReViSP) tool: a 3D volume rendering method we developed to reconstruct the 3D shape of multicellular spheroids, besides estimating the volume by counting the voxels (3D pixels) fully included in the 3D surface. ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements for running ReViSP from the source code: MATLAB 2020a and Image Processing Toolbox 11.1 or later versions. ... -
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ANDTool
Analysis Nuclei DAB (AND) Tool
Analysis Nuclei DAB (AND) Tool is a Graphical User Interface (GUI) to analyse microscopy images representing cells with nuclei stained using DAB dyes. The tool requires as input the original RGB images, and the FastRed, FastBlue, DAB channel, easily obtained using the Fiji function: "ImageJ" -> "Image" -> "Colour Deconvolution" -> "FastRed FastBlue DAB" Then, the tool first segment the nuclei using the FastBlue channel and the DAB channel, and then computes statistics by subdividing the sample in three regions according to the FastRed channel: a dark-red ROI, a light-pink ROI and a white ROI. ... -
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amilab is a tool for image processing that includes its own scripting language, and an interface for visualizing 2d/3d images and 3d surfaces. Its main application is medical image processing.
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BRIC
BRIC is a powerful tool for batch image processing.
Bric is a cross-platform batch image processor. You can convert, resize, rotate and add watermark to your images. Multiple file types are supported for input and output. The project started back in 2011 and was maintained for a couple of years. In 2020 BRIC is again in active development, so some of the features written below might be outdated. Please be patient, until everything is reviewed and rewritten. -
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AwesomeBump
Open Source graphic tool and alternative to Insane Bump
AwesomeBump is a free and open source graphic app written using Qt library. It was made as an alternative to known gimp plugin Insane Bump or the commercial tool Crazy Bump. It is designed to generate normal, height, specular or ambient occlusion, metallic, roughness and other textures from a single image. Most of the image processing is done on GPU so the program runs very fast and all the parameters can be changed in real time. -
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LaueTools
open source python packages for X-ray MicroLaue Diffraction analysis
LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools -
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cocolib / light field suite
CUDA library for continuous optimization and light field analysis
Library for continuous convex optimization in image analysis, together with a command line tool and Matlab interface. Implements several recent algorithms for inverse problems and image segmentation with total variation regularizers and vectorial multilabel transition costs. Also included is a suite for variational light field analysis, which ties into the HCI light field benchmark set and givens reference implementations for a number of our recently published algorithms. *** NOTE: documentation on the SourceForge page is outdated and not updated anymore, please visit http://cocolib.net *** -
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CognitionMaster
object-based image analysis framework
Wienert S, Heim D, Kotani M, Lindequist B, Stenzinger A, Ishii M, Hufnagl P, Beil M, Dietel M, Denkert C, Klauschen F. CognitionMaster: an object-based image analysis framework. Diagn Pathol 2013, 8:34 -
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MatQuantify
An image processing tool
MatQuantify, written in MATLAB, detects both large-scale and subtle structural changes in the spindle or DNA and can be used to statistically compare the effects of different treatments. MatQuantify can quantify various physical properties extracted from fluorescence microscopy images, such as area, lengths of various components, perimeter, eccentricity, fractal dimension, satellite objects and orientation. It can also measure textual properties including entropy, intensities and the... -
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F-Tracker3D
A software tool for tracking fluorescent cells in 3D
F-Tracker3D is acronym of "fluorescent cell tracker in three-dimensions". It is a software tool designed to track fluorescent cells using time-lapse z-stacks of images acquired with a confocal or light-sheet microscope. First, each single cell is tracked in 2D by using the maximum intensity projections of the z-stacks and CellTracker, the free open source software available at: www.celltracker.website. Then, the 3D track of each cell is obtained analysing the z-stacks and looking for the z-plane with the maximum intensity value for the different x-y positions previously determined. ... -
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TraceX
MatLab App for calculating fitting isotopic exchange profile data
...Developed for measuring self-diffusivity and effective surface exchange coefficient of ion conducting materials. Requires MatLab image processing toolbox If you use this tool for you research, please cite my PhD thesis: Cooper, S. J. Quantifying the Transport Properties of Solid Oxide Fuel Cell Electrodes. (Imperial College London, 2015). @phdthesis{SJCooper2015, author = {Cooper, S. J.}, number = {November}, publisher = {Imperial College London}, school = {Imperial College London}, title = {{Quantifying the Transport Properties of Solid Oxide Fuel Cell Electrodes}}, year = {2015} } -
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Open Cezeri Library
Effective Linear Algebra and Computer Vision Library with JAVA
...Currently, it holds following main concepts 1- Vision: It can access web cams, imaging source industrial cameras for manuel settings and advanced issues. Studies on accesing Leapmotion and Kinect is still under-development. 2- Machine learning: It uses Weka Software tool and some personel coded ML algorithms 3- CMatrix: Special matrix library called as CMatrix meaning Cezeri Maztrix Class. Actually it is regarded as the core of the OCL. CMatrix supports fluent interface and method chaining. -
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A GUI interface to a tool for generating SSBumps (Self Shadowed Bump Maps). Includes a CUDA GPU rendering extension.
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RootAnalyzer
A cross-section image analysis tool
Update: A graphical user interface for RootAnalyzer, along with other root phenotyping tools can now be found at https://sourceforge.net/projects/rootphenotypingsuite/ RootAnalyzer is a fully automated tool, for efficiently extracting and analyzing anatomical traits from root cross section images. Using a range of image processing techniques such as local thresholding and nearest neighbor identification, RootAnalyzer segments the plant root from the image's background, classifies and characterizes the cortex, stele, endodermis and metaxylem, and subsequently produces statistics about the morphological properties of the root cells and tissues. -
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ForcePAD is an intuitive tool for visualising the behavior of structures subjected to loading and boundary conditions. The design of the user interface aims to be as intuitive as a standard image processing software.
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TejashCAM
Standalone tool for taking pictures out of your webcam
TejashCAM is a very small standalone tool for taking pictures from your camera. It does not requires any installation, just grab it and run to take images. It supports, fast image processing algorithms to take bitmap images and support the camera settings, so you can adjust your camera according to your need. -
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GridMos
GridMos, mosaicing tool (in MATLAB) to improve cell counting.
...Unfortunately, to build a mosaic of a hemocytometer's grid shows some problem due to the repeated patterns (i.e., the squared blocks of the grid). GridMos is an open-source software tool conceived to build an image mosaic of a hemocytometer's grid. It is optimized to build the mosaic starting from a sequence of overlapping images previously acquired. The Graphical User Interface (GUI) implemented makes GridMos a very user-friendly software tool. Requirements: MATLAB 2009b (32-bit) and Image Processing Toolbox 8.1 or later versions. -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
...MatrixUser provides a nice graphical environment for easily performing image analysis tasks including multidimensional image display, matrix (image stack) processing and rendering etc. MatrixUser is a great lightweight tool for users who are working in image processing field under Matlab. -
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CHISDK
It`s Open Source Project That Contains Huge SDK`S Inside It.
... - Compilers ( C++ , C# , VB.Net , HTML , JavaScript ) . - Image Processing ( Motion Detector ) . - Unity3D ( Unity3D WebPlayer Integrated With Simple Project ) . - Cropper Tool . - Translation ( Text / Voice / Online ) English , Arabic , Many Languages .. - File Compression ( *.CHIPackage ) . - Diagram Editor . - Artificial Intelligence ( Prolog Interpreters ) . - Alarm ( Text / Voice ) . - Security ( Screen Locker ) . - Quick Note . - Math And Polynomial Calculators . - And More .... -
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Bell Open Imaging Package
A free image processing and managing libary for windows forms.
Bell Open Imaging Package is a free, advanced and easy to use image processing libary for c# and vb.net windows forms applications, made by Bell Software. -
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"aura" tool is a desktop (X root window) background setter, making heavy accent on image processing and clever scaling (liquid rescale, solid margins cropping, labelling) capabilities.
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FluoJ
Fluorescence microscopy image analysis tool
Fluorescence microscopy became a common tool in cell and molecular biology. Image analysis of fluorescent molecules provides key information about the location, interactions, and dynamic behavior of target molecules. Usually user needs to recognize, characterize and classify particles, and in many cases to do statistical inferences from data collected. FluoJ is a software tool to automate many of these steps. -
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Ada projects - for educational purposes. Each is a small project illustrating a particular tool, technique. Ada is the primary language but will touch upon Qt, Networking, Image processing and so on.
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...The quality for output when optimizing is variable. Color channels can be filtered. An internal benchmarking tool is available. Indexed pixel format images can be processed. You can process your images, publish pieces of your screens, files and send links to everyone you want to share it.
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SIET, the Simple Image Editing ( Editor ) Tool, is a simple-to-use, handy and free application for such tasks as resizing, cropping, retouching, watermarking, etc... Batch processing is also provided. Because is OS Independent, written in an interpreted language, SIET can run on any platform that has a java virtual machine available. Tested on: Windows 7, Windows XP, Linux Ubuntu, Linux Mint.
