Search Results for "bio-bwa-files"
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Showing 46 open source projects for "bio-bwa-files"
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1
Docker Gradle Plugin
Gradle plugin for orchestrating docker builds and pushes
a Gradle plugin for orchestrating docker builds and pushes. Add basic tasks for building and pushing docker images based on a simple configuration block that specifies the container name, the Dockerfile, task dependencies, and any additional file resources required for the Docker build. Adds a task for populating placeholders in a docker-compose template file with image versions resolved from dependencies. Adds tasks for starting, stopping, statusing and cleaning up a named container based... -
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OmegaT - multiplatform CAT tool
The free computer aided translation (CAT) tool for professionals
OmegaT is a free and open source multiplatform Computer Assisted Translation tool with fuzzy matching, translation memory, keyword search, glossaries, and translation leveraging into updated projects. -
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GTD Sync
The Freeplane add-on that syncs a GTD mind map with a todo.txt file
... actions to the todo.txt file. In this way both files will stay synchronised. In addition you need a cloud service like Dropbox to keep your todo.txt file in sync between systems. For more information on Freeplane, see http://www.freeplane.org/wiki/index.php/Main_Page The todo.txt format is a simple set of rules that makes todo.txt both human and machine-readable, see http://todotxt.com/. The add-on is inspired by Freeplane|GTD, see http://auxilus.com/blog/freeplanegtd/ -
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GETL
ETL engine based on Groovy
P.S. Dear friends. Repository migration to https://github.com/ascrus/getl . You can download jar file from this site or maven. GETL - based package in Groovy, which automates the work of loading and transforming data. His name is an acronym for «Groovy ETL». GETL is a set of libraries of pre-built classes and objects that can be used to solve problems unpacking, transform and load data into programs written in Groovy, or Java, as well as from any software that supports the work with... -
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iCRM Community Edition
Highly advantageous for businesses of any size, whether small, medium,
Ai-iCRM empowers sales, support, and marketing teams to seamlessly collaborate and optimize customer experiences, driving improved business outcomes. The platform offers a comprehensive CRM suite, including tools for managing leads, accounts (B2B), contacts, customers (B2C), opportunities, and support tickets. Get started with iCRM by downloading it today for Free -
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Snippetory
Java templating solution with passive templates.
Snippetory is a platform for java developers dealing with any text generation. The abstraction layer helps to keep the issues of the 'view' in the view, while all logic is implemented in java. Editing, debugging and testing, all with the tools one is already used to. The separation of template keeps the template simple, the logic compact, and easy to navigate, and offers completely new re-usage scenarios. Sourceforge code hosting is abandoned. Primary site is now... -
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Metl ETL Data Integration
Simple message-based, web-based ETL integration
Metl is a simple, web-based ETL tool that allows for data integrations including database, files, messaging, and web services. Supports RDBMS, SOAP, HTTP, FTP, SFTP, XML, FIXLEN, CSV, JSON, ZIP, and more. Metl implements scheduled integration tasks without the need for custom coding or heavy infrastructure. It can be deployed in the cloud or in an internal data center, and it was built to allow developers to extend it with custom components. -
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Lilith is a logging and access event viewer for Logback, log4j & java.util.logging. It has features comparable to Chainsaw for log4j. This means that it can receive logging events from remote applications using Logback as their logging backend
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MyJaPhoO My Java Photo Organizer Manages local Photo and Video Collections
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Stop messing with tools that aren’t designed to amplify volunteer programs. With VolunteerMatters, it’s a delight to manage everything in one place.
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JPPF
The open source grid computing solution
JPPF makes it easy to parallelize computationally intensive tasks and execute them on a Grid. -
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FileBot
The ultimate TV and Movie Renamer / Subtitle Downloader
FileBot is the ultimate tool for renaming your movies, tv shows or anime and downloading subtitles. It's smart, streamlined for simplicity and just works. FileBot supports Windows, Linux and Mac, plus there's a full-featured command-line interface for all sorts of automation. -
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Maui
Maui is the Maltcms User Interface
Maui is the Maltcms User Interface, a rich client application for Chromatography-Mass Spectrometry and related research areas. -
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BOWS
Bioinformatics Open Web Services
BOWS is a generic system based on Web Services which allows programmatic access to applications running on HPC clusters. BOWS allows incorporation of several independent applications since programmers can install them in HPC clusters in any programming language. The lonely requirement is to write a script named “arrow” which calls BOWS back-end services periodically in order to check for new processes and their required parameters. If a new process is found, the “arrow” script should change... -
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The Maltcms - Modular Application Toolkit for Chromatography Mass-Spectrometry is a JAVA API for preprocessing, alignment, analysis and visualization of data stored in open file formats used in Proteomics and Metabolomics research.
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DataMakerApi
An API for Java programmers to make test data
DataMakerApi is an API packaged as a jar for Java programmers to use in generating randomized test data in any quantity desired. An API is used because the output can take so many forms (SQL for traditional databases, JSON text for NoSQL databases, XML or delimited text for flat files, etc...). This API will facilitate the work of creating test data for a wide range of applications. -
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SeBase
Selenium Base Framework
I am often asked to start a new Selenium (http://seleniumhq.org/) test automation project. Reinventing the wheel each time sucks. Everything in this SF project are various tips & tricks that I figured out over time. Each of the files under net.sourceforge.sebase.demos is a proof of concept (POC) to get a different technology to work with Selenium. -
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Identifiers.org is a system providing resolvable and persistent identifiers, in the form of URIs, used to identify data for the scientific community, with a current focus on the Life Sciences domain. The provision of resolvable identifiers (URLs) fits well with the Semantic Web vision, and the Linked Data initiative. The resolving services of Identifiers.org rely on the information stored in the MIRIAM Registry.
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OpenSearchServer Store
A file server with a RESTFul web service.
An open source (Apache 2 license) file server software with a RESTFul web service for file management in a cluster of nodes. Including 4 set of API - Store API: Upload, download files and directories - Process API: Managing the long term process runs - Glacier API: Uploading from the server to Glacier - Cluster API: Manage the nodes in the cluster -
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grepp
An ultimate text-analysing tool
A command line tool for text file analyis, filtering, splitting and reporting. Runs under Java (1.5+), supports plugins written in Groovy. Has nix and win batch files in distributions. -
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SSearcH Everywhere
Search easily on local or remote files
SSearcH Everywhere is a simple and useful application that will make the search of text in remote files easy and fun. -
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CLADlims
Web based LIMS for lab animal weight and tumour growth tracking
... browser. Multiple tumours per animal can be tracked. With CLADlims you can improve efficiency by getting rid of the text files or spreadsheets and save time and money. -
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Onco-STS
A web-based Laboratory Information Management System
Onco-STS is a web-based Laboratory Information Management System for sample and analysis tracking in oncogenomic experiments. The systematic sequencing and analysis of tumour samples, as well other oncogenomic experiments, necessitates the tracking of relevant sample information throughout the investigative process. These meta-data of the sequencing and analysis procedures include information about the samples and projects as well as the sequencing centers, platforms, data locations,... -
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XTarget
Java API and Groovy Library for XML Scripting
XTarget is an Groovy Library for automated editing of small XML Databases with Groovy scripts. It focuses on simultaneous editing of data, including structures like lists and maps, and linking between various XML files. -
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GDuplicateFinder
GDuplicateFinder - A FREE Groovy way to find file duplicates!
Unlike other duplicate finders such as Easy Duplicate File Finder, Auslogics Duplicate File Finder, MindGems Fast Duplicate File Finder, Duplicate Cleaner, DupFiles and others, GDuplicateFinder is a FREE cross-platform application, with the ability to search among not just local files, but files on the network, such as a Windows or a Linux share using VFS library. Taking advantage of Groovy facilities and GPars power to process in parallel, GDuplicateFinder will help you get rid of those... -
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Liferay for Virgo
The research of an ability to port Liferay to Virgo
... inapplicable for my tasks for a lot of different reasons (low performance, inconvenient migration process, poor environment, not enough functionality of tools, low robust, poor documentation and etc.) If someone want to know in details I can formalize everything on the forum by a request. I have published this project with hope that it might save efforts, time and money from waste for someone. See the file repository and the readme files. Additional documents will be soon on wiki