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Showing 35 open source projects for "can"
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Gemi
PCR primers / probes design from multiple & degenerate sequences
Gemi, an automated, fast, and easy-to-use bioinformatics tool with a user-friendly interface to design primers and probes for polymerase chain reaction (PCR). Gemi accepts multiple aligned and long DNA and RNA sequences with degenerate nucleotide (non-A/C/G/T bases). Gemi can be used for quantitative, real-time and conventional PCR (qPCR, rt-PCR, etc.), and Sanger sequencing. Gemi can parse large dataset of sequences efficiently. Python source code is available upon request. Milestone: The tool reached about 3000 downloads sine 2012. Article Gemi: PCR primers prediction from multiple alignments. ... -
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...CUSTOMHyS-Qt is a GUI for the CUSTOMHyS framework, which is an interactive tool for customysing heuristic-based algorithms. The CUSTOMHyS-Qt is written in Python and uses the PyQt5 library for the GUI. Further references about the backend can be found in the CUSTOMHyS repository.
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Sudoku Maker is a generator for Sudoku number puzzles. It uses a genetic algorithm internally, so it can serve as an introduction to genetic algorithms. The generated Sudokus are usually very hard to solve -- good for getting rid of a Sudoku addiction.
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Alcinoe
compoments suite for Delphi
Project description and support moved to : https://github.com/Zeus64/alcinoe However you can use the source you prefer, the SVN here or the GIT on github, both are synchronized (just that GIT don't support large file > 100 mo so some minor files used only as references are missing from GIT) -
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...GAKNN is built with k- Nearest Neighbour algorithm optimized by the genetic algorithm. Gene annotation datasets saved under .csv or .arff formats with Gene Ontology or FunCat categorization can use GAKNN to predict gene functions.
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HH-Evolver
A framework for domain-specific, hyper-heuristic evolution
HH-Evolver is a framework for domain-specific, hyper-heuristic evolution. HH-Evolver automates the design of domain-specific heuristics for planning domains. Hyper-heuristics generated by our tool can then be used with combinatorial search algorithms such as A* and IDA* for solving problems of the given domain. -
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deapheap
Deap is a doubly heap for both min and max number access.
A deap is a doubly priority queue for efficient data operations. Both insertion and deletion operations take O(log(N)) time. Access of min or max takes constant time. It can be useful when both min and max are needed in the queue. It can also be used in situations where the number of items is too large and items with low priorities can be dropped with keep memory footprint small. -
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NeuroSolutions: Formula Generator
Utility converts the weights file of a MLP Breadboard into a formula
The NeuroSolutions: Formula Generator utility converts the weights file of a default MLP breadboard (1-hidden layer with a TanhAxon in the hidden layer and either a TanhAxon or BiasAxon in the output layer) into a usable formula that can be copied and pasted into your own programs to compute the output of the trained neural network. -
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EASEA (EAsy Specification of Evolutionary Algorithms: pronounce "easy") is a high-level language dedicated to the specification of evolutionary algorithms. EASEA up to version 0.7 compiles .ez specification files into C++ or JAVA object files.
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libfgen
Library for optimization using a genetic algorithm or particle swarms
libfgen is a library that implements an efficient and customizable genetic algorithm (GA). It also provides particle swarm optimization (PSO) functionality and an interface for real-valued function minimization or model fitting. It is written in C, but can also be compiled with a C++ compiler. Both Linux and Windows are supported. -
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FJSP Software
A Software for Flexible Job Shop Scheduling
Flexible job shop scheduling problem (FJSP) is very important in many fields such as production management, resource allocation and combinatorial optimization. In the real manufacturing systems, each operation could be processed on more than one machine and each machine can also process several operations. This feature is known as flexibility. You can define your problem in this software and get an optimal solution as a Gantt Chart. This software is based on my M.Sc. thesis of Shahed university (Tehran, Iran). -
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This project provides a set of Python tools for creating various kinds of neural networks, which can also be powered by genetic algorithms using grammatical evolution. MLP, backpropagation, recurrent, sparse, and skip-layer networks are supported.
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MbPc Pagerank Simulator
Testbed for playing with the algorithm "pagerank" of Google
Provide a testbed to play with pagerank-like algorithm on graph. You can easily add vertices, edges, save the graph for reuse, etc. For now, only Pagerank is implemented, but in the future, other algorithms will be added. -
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A self-contained, fully configurable Java "game" to simulate multi-species evolution. Design species by optionally specifying every attribute; modify any or all environmental settings; let them loose to eat, fight, procreate, die, and Evolve!
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The Mars Rover Simulator project is based on the evolutionary robotics paradigm where an artificial agent acquires its skills through the process of artificial evolution. This simulator can be useful to evolve neural network controllers for the rover
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X-GAT (XML-based Genetic Algorithm Toolkit) is a Java framework to optimize problems with Genetic Algorithms (GAs). Differently from other frameworks, X-GAT contains ready-to-use GAs implementations and new features can be easily added.
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Sleepwalker aims to provide a highly abstract, universal, reusable, extensible Java-based genetic algorithms framework which can be used as a basis for modelling and programming virtually any practical optimisation problem.
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...Evolve them (and control flow) as cycles of arrays in arrays with size constraints based on other array sizes (at specific index) in terms of range, multiply, exponent, or permutation. No working code yet. Whats there now is an extension of GigaLineCompile which would become part of Human AI Net, but there are other projects to finish before I can come back to this one.
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Geneur is an Open Source scheduler for GRID. It is based on variation of genetic algorithms. Geneur uses backfill scheduling algorithm to create first genetic population.
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The C++ library Geneva allows to run large scale parametric optimization problems. It can run in serial or multi-threaded mode or in a networked environment. The library currently covers Evolutionary Strategies, Genetic Algorithms and mixed scenarios.
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libconhash is a consistent hashing libraray, which can be compiled both on Windows and Linux platform. High performance, easy to use, and easy to scale according to node's processing capacity.
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In this project we develop a software, that uses evolutionary algorithm to evolve a solution, that can drive a car on an arbitrari path.
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This is module for basic computation with floating point numbers. Numbers can have very wide mantissa for good precision, for realize "arbitrary-precision arithmetic". Module was adapt for BCB and MSVC compilers. Russian comments.
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Madavi Code Library consists of a set of tested utility functions and non-visual and visual classes which can be instantly reused in your Delphi win32 and .Net projects. The library is built upon code written by Kaushalya Damitha for self interest.
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CGL(C Generic Library) is a stl-like library written in pure C.It implements iterators, memory management,generic containers such as list,map, generic algorithms such as sort() and search(),and it can manipulate any types of data.