Search Results for "java open source" - Page 9
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Showing 503 open source projects for "java open source"
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GenomeScanner
GenomeScanner displays tag data obtained from Chip-Seq and RNA-Seq.
The "Genome Scanner" is a program written to display tag data obtained from ChIP-Seq and RNA-Seq experiments. Programs already exist to do this job, but the research group here at NYU needed to explore different methods for scoring tag peaks and to visualize the results. "Genome Scanner" (GS) was written to be light-weight, fast and easily adapted to varied display tasks. The package also contains software to plot KM survival curves for patients based on gene expression data from tumor biopsies. -
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gMol
gMol molecular graphics
We've moved to https://github.com/tjod/gMol/wiki gMol is an interactive visualization system used to display and manipulate 3-dimensional models of scientific data, such as molecular structures and surfaces. It contains both OpenGL and web browser widgets that enable flexible user interfaces. -
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AUTO is a publicly available software for continuation and bifurcation problems in ordinary differential equations originally written in 1980 and widely used in the dynamical systems community.
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CIOS Audio Core
A cross platform audio inteface
CIOS Audio Core is the infrastructure and subsystem in Collective Intelligence Operation System. It is a cross platforms audio abstract interface, supports including Mac OS X, Linux, Android, iPhone OS and Windows 7. -
Desktop and Mobile Device Management SoftwareDesktop Central is a unified endpoint management (UEM) solution that helps in managing servers, laptops, desktops, smartphones, and tablets from a central location.
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graphene-like-ribbons
Calculate electronic properties of graphene-like nanoribbons
User friendly interface for calculating electronic properties in graphene-like ribbons. The programs uses the tight binding approximation and mean field Hubbard model to predict electronic properties of graphene-like nanoribbons. See Discussion to ask questions or details Update: New versions of this program will be known as quantum-honeycomp -
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YAFEMS
Yet Another Finite Element Method Solver
YAFEMS (Yet Another Finite Element Method Solver) is a FEM solver for Linux and WIndows that reads a MED mesh file produced by Salome (http://www.salome-platform.org/) with certain groups created into the mesh, and with the help of an input text file (.yaf), performs a 3D or 2D plane stress or plane strain analysis and creates results in plain text format and in MED format. This way a complete analysis can be carried inside Salome, where a mesh file can be created, exported and read by... -
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MDcons(Molecular Dynamics consensus)
Interpretation of Biomolecular MD simulations
MDcons is a tool to analyze conserved contacts during Molecular Dynamics (MD) simulations of Protein, Rna, Dna & Ligand based complexes. The input is either a Molecular Dynamics trajectory or a set of snapshots. The input can also be a single snapshot. The outputs are (1) map of most/less frequently conserved contacts during MD (2) a list of most/less frequently conserved contacts during MD. -
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PDSTRIP is a hydrodynamic strip code for seakeeping. It computes ship motions for monohulls including sailing boats. PDSTRIP has been abandoned by its initiators, who do not wish to be contacted with use questions. The position of maintainer is vacant.
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The Moving Finite Elements project hosts a collection of simulation codes for time-dependent PDE systems that implement various forms of Keith Miller's gradient-weighted moving finite element (GWMFE) method. The Calliope sub-project aims to provide new reference implementations in modern object-oriented Fortran. Click on the Calliope tab on the main project menu bar.
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Source Navigator NG is a source code analysis tool. With it, you can edit your source code, display relationships between classes and functions and members, and display call trees. You can navigate your source code and easily get to declarations or implementations of functions, variables and macros (commonly called "symbols") which helps you discovering and mapping unknown source code for enhancement or maintenance tasks.
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wreport has moved to: https://github.com/ARPA-SIMC/wreport dballe has moved to: https://github.com/ARPA-SIMC/dballe bufr2netcdf has moved to: https://github.com/ARPA-SIMC/bufr2netcdf
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RelKinema
Relativistic two-body kinematics calculator for nuclear reaction
Relativistic 2-body kinematics calculator for nuclear reaction, including mass data manager, result table browser and plotter. -
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TIDES
Taylor series Integrator for Differential Equations
Taylor series Integrator for Differential EquationS. This software is developed by Profs. A. Abad, R. Barrio, F. Blesa and M. Rodriguez, (GME, University of Zaragoza, Spain). It consists on a C (Fortran) library, libTIDES, and a Mathematica package, MathTIDES. (MathTIDES requires Mathematica version >= 7.0) . Basic references: * A. Abad, R. Barrio, F. Blesa, M. Rodriguez, 2012. Algorithm 924: TIDES, a Taylor series Integrator for Differential EquationS, ACM TOMS. 39, no. 1, art. 5.... -
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Larch: Data Analysis for X-ray Spectra
Data Processing and Analysis for X-ray Spectroscopy and More
Larch is a scientific data processing language that is designed to be easy to use for novices and complete enough for advanced data processing and analysis. Larch provides a wide range of functionality for dealing with arrays of scientific data, and basic tools to make it easy to use and organize complex data. Larch has been primarily developed for dealing with x-ray spectroscopic and scattering data, especially the kind of data collected at modern synchrotrons and x-ray sources. ... -
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Advanced Numerical Instruments 2D
Advanced numerical instruments: adaptive meshing, FE methods, solvers
Ani2D provides portable libraries for each step in the numerical solution of systems of PDEs with variable tensorial coefficients: (1) unstructured adaptive mesh generation, (2) metric-based mesh adaptation, (3) finite element discretization and interpolation, (4) algebraic solvers. -
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bagemass
Bayesian age and mass estimates for transiting planet host stars
Source code, makefile and README for installation of software used for the analysis in Maxted, Serenelli & Southworth, "Bayesian mass and age estimates for transiting exoplanet host stars", A&A 575, 36, 2015. -
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fzcal
A calculator capable of complex arithmetics
A command line calculator capable of complex arithmetics. -
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Debian Unstable/testing alpha.
Pre-Alpha Console distro for high performance Linux computing.
Basic Debian INTEL/AMD HPC console/desktop multi purpose. Linux for software devs/QA and thin laboratory clusters. MIC hardware, NUMA and live network memory and full IPv6 are supported. Final alpha release features: ======== * Usb image * General debian repos * VM optimizations * Hugepages by default * CGROUPs optimized by default * ALSA * Latest Debugging / Baremetal kernels * Full Haswell and MIC support in test * Full optimized python support * Full... -
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CVM C++ Class Library encapsulates concepts of vector and square, band, symmetric and hermitian matrices in Euclidean space of real and complex numbers. It utilizes BLAS and LAPACK Fortran libraries. See http://cvmlib.com for binaries and more details.
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ADI GNU toolchain
The GNU Toolchain for ADI's Blackfin and future processors
This project is no longer maintained by Analog Devices. For support, engage with the community at https://ez.analog.com/dsp/software-and-development-tools/linux-blackfin/. You have found the home page of the GNU toolchain project for ADI's Blackfin an future processors. This is the central site for all toolchain components whether you are targetting to run Linux or bare metal on the Blackfin and future processors, running on Linux or Windows hosts. These components consist... -
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piv_clustering
structural clustering of atomic trajectories based on PIV
This program allows to perform a structural cluster analysis of atomic trajectories obtained, e.g., from molecular dynamics simulations. At variance with other approaches, it is possible to analyse also processes in solution, e.g., chemical reactions in liquid water, since the distance metric is based on a Permutation Invariant Vector (PIV) that is symmetric under exchange of identical atoms or molecules, including on the same footing both solute and solvent degrees of freedom. The... -
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FiberMC
Light scattering simulation tool for fibrous media
This Monte Carlo simulation tool calculates multiple scattering down at particle level by small spherical objects and infinitely long cylinders. -
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Sextant
Manuel, tables et logiciels de navigation astronomique
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Inline fortran functions
Fortran emulation of Matlab inline functions
This is a set Fortran 2003 modules that allows to call "formula" objects that resemble the Matlab inline functions (also called "anonymous" or "lambda" functions in other languages). User can give a formula in a string and evaluate it through an eval procedure. The implementations take advantage of the Fortran 2003 procedure pointers to speed up the formula evaluation. These modules also permit to define "expressions". A expression is an uniform way to work with several data types:...
