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Ontologies managed and created by the Marine Metadata Interoperability Initiative (MMI), http://marinemetadata.org. Most of the ontologies are applicable in general for Earth Sciences.
The OBO-Annotator is a semantic NLP tool that is designed to give its end-users a great deal of flexibility to combine any number of OBO ontologies from the OBO foundry regardless of their format and use them to annotate text-bases.