Search Results for "ontologies"
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Showing 26 open source projects for "ontologies"
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DODDLE-OWL
a Domain Ontology rapiD DeveLopment Environment – OWL extension
DODDLE-OWL is a domain ontology development tool for the Semantic Web. DODDLE-OWL makes reuse of existing ontologies and supports the semi-automatic construction of taxonomic and other relationships in domain ontologies from documents. -
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Mimosa is a modeling and simulation platform, covering the process from building conceptual models to running the simulations. The specification uses ontologies and an extensible set of formalisms for the dynamics. The simulation kernel is based on DEVS.
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obo An umbrella organization for ontologies and structured shared controlled vocabularies for use across all biological and biomedical domains
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Discriminative Language Editor
Discriminative language editor based on ontologies
Text editor in Java that is able to detect discriminative expressions while the user is typing. When the internal ontology-based analyzer detects a potential discriminative expression the user is advised by underscoring the related words in the text. A descriptive message about the issue is also shown to the user when the cursor is placed over the potential discriminative expression. -
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OntoMetriCalc
A Java API for measuring OWL ontologies
OntoMetriCalc (Ontology Metrics Calculator) is a Java API for measuring OWL ontologies based on Jena. -
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Agent.GUI
The Project moved to github https://github.com/EnFlexIT/AgentWorkbench
The project has moved to github https://github.com/EnFlexIT/AgentWorkbench Agent.GUI is a simulation framework and toolkit based on the JADE framework. It provides functionalities for time aspects, agent-environment interaction, visualization and load balancing, Furthermore, the included application focuses the usability for end users. -
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A consumer API that can process the response of an ontology evaluation web service provider.
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The Systems Biology Ontology project (SBO) goal is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. !!!! Important Announcement !!!! We have moved the curation and development of Systems Biology Ontology (SBO) to a git-hub repository https://github.com/EBI-BioModels/SBO. Hence, this SourceForge SBO project has also been retired.
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VSMOExp
Ontologies, which are made up by standardized and defined controlled
Ontologies, which are made up by standardized and defined controlled vocabulary terms and their inter-relationships, are comprehensive and readily searchable repositories for knowledge in a given domain -
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SemaRule Navigator is an Integrated Suite of Open-Source and Free-License Software, placing Semantic and Text Analysis Technologies in the toolbox of Researchers, Students, and Enterprises.
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The Shrimp suite provides interactive visualizations of graph-based data. Creole (Eclipse plug-in) visualizes Java source code. Jambalaya (Protege plug-in) visualizes ontologies (including OWL), & Stand-Alone Shrimp visualizes RSF/GXL/PRJ/PPRJ files.
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NOTE: please refer to OPPL 2. OPPL is a preprocessor language that allows users to define macros for altering OWL ontologies. The syntax is very simple and intuitive, offering a very abstract and high level "scripting" language, for example for int
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Protege is a free, open-source platform that provides a suite of tools to construct domain models and knowledge-based applications with frame-based and Semantic Web ontologies.
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OntoExtractor is a way of building ontologies that proceeds in a bottom-up fashion, defining concepts as clusters of concrete XML objects. From a set of XML documents the application generates a taxonomy. OntoExtractor has been developed so far by the Kn
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Ontologies managed and created by the Marine Metadata Interoperability Initiative (MMI), http://marinemetadata.org. Most of the ontologies are applicable in general for Earth Sciences.
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The MatrixBrowser project presents a new approach for visualizing and exploring large networked information structures which may represent, for instance, linked information resources or metadata structures such as ontologies.
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The Semantic Web Service Composer is a prototyp for semi-automatic data flow design between Semantic Web services described in different domain ontologies. More info: http://citeseer.ist.psu.edu/viewdoc/versions?doi=10.1.1.60.9276
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JXML2OWL Project is divided in two sub projects: JXML2OWL API, a library for mapping XML schemas to OWL Ontologies on the JAVA plaform. JXML2OWL Mapper, an easy to use standalone application with a graphical user interface using the JXML2OWL API.
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PROMI is a Platform for the Reuse of Ontologies through Merging and Integration. It imports ontologies represented as OWL, RDF(S), DDL, DTD and XML schemas and incrementally merges their contents using various matching algorithms.
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OntoCardio is an initiative to build ontologies for the legacy Cardio Database (Resource of bioinformation on cardiovascular diseases). SMI's Protege and its OWL plug-in has been adopted as the ontology construction and programming framework.
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danaides
Meta data extractor based on ontologies
Danaides stores meta-data from biological banks in a graph databases as well as OBO formatted ontologies. It also provides a web query interface to parse ontologies or extract nodes based on ontology requirements. Example: Get all known elements that are in family of Fish (species ontology) AND a RNA (sequence ontology). -
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GENoDL is a Description Logics based reasoning tool that automatically generates service ontologies from a given Knowledge Base.
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The ROSE reasoner is used to for reasoning with RDFS ontologies and currently supports the RDF, RDFS and eRDFS entailment regimes. An online demo of the RDFS Reasoner can be found here: http://tools.deri.org/rdfs-reasoner/
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A biological data warehouse that locally stores and integrates biological sequences, molecular interactions, homology information, functional annotations of genes, and biological ontologies. Website: http://bioinformatics.ubc.ca/atlas
