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Showing 214 open source projects for "program"
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DiffOpt.jl
Differentiating convex optimization programs w.r.t. program parameters
DiffOpt.jl is a package for differentiating convex optimization programs (JuMP.jl or MathOptInterface.jl models) with respect to program parameters. Note that this package does not contain any solver. This package has two major backends, available via the reverse_differentiate! and forward_differentiate! methods, to differentiate models (quadratic or conic) with optimal solutions. Differentiable optimization is a promising field of convex optimization and has many potential applications in game theory, control theory and machine learning. ... -
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MPI.jl
MPI wrappers for Julia
This is a basic Julia wrapper for the portable message-passing system Message Passing Interface (MPI). Inspiration is taken from mpi4py, although we generally follow the C and not the C++ MPI API. (The C++ MPI API is deprecated.) MPI is based on a single program, multiple data (SPMD) model, where multiple processes are launched running independent programs, which then communicate as necessary via messages. As the main entry point for users, MPI.jl provides a high-level interface which loosely follows the MPI C API and is described in details in the following sections. The syntax should look familiar if you know MPI already, but some arguments may not be needed (e.g. the type or the number of elements of arrays, which are inferred automatically), others may be placed slightly differently, and others may be optional keyword arguments (e.g. for the index of the root process, or the source and destination of point-to-point communication functions). -
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Circuitscape.jl
Algorithms from circuit theory to predict connectivity
Circuitscape is an open-source program that uses circuit theory to model connectivity in heterogeneous landscapes. Its most common applications include modeling the movement and gene flow of plants and animals, as well as identifying areas important for connectivity conservation. The new Circuitscape is built entirely in the Julia language, a new programming language for technical computing. -
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Fermi.jl
Fermi quantum chemistry program
Fermi.jl is a quantum chemistry framework written in pure Julia. This code is developed at the Center for Computational Quantum Chemistry at the University of Georgia under the supervision of Dr. Justin M. Turney and Prof. Henry F. Schaefer. This work is supported by the U.S. National Science Foundation under grant number CHE-1661604. Fermi focuses on post Hartree--Fock methods. Currently, only restricted references are supported. This is intended as a research code with an ever growing... -
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EAGO.jl
A development environment for robust and global optimization
EAGO is an open-source development environment for robust and global optimization in Julia. EAGO is a deterministic global optimizer designed to address a wide variety of optimization problems, emphasizing nonlinear programs (NLPs), by propagating McCormick relaxations along the factorable structure of each expression in the NLP. Most operators supported by modern automatic differentiation (AD) packages (e.g., +, sin, cosh) are supported by EAGO and a number of utilities for sanitizing... -
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gping
Ping, but with a graph
Graphical Ping displays a color-coded realtime graph of continuous pings to a specified host. No warranties are provided on this program, it is completely free to use. Graph the execution time for a list of commands rather than pinging hosts. Resolve ping targets to IPv4 address. Resolve ping targets to IPv6 address. Uses dot characters instead of braille. Determine the number of seconds to display in the graph. Watch interval seconds (provide partial seconds like '0.5'). -
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Stan.jl
Stan.jl illustrates the usage of the 'single method' packages
A collection of example Stan Language programs demonstrating all methods available in Stan's cmdstan executable (as an external program) from Julia. For most applications one of the "single method" packages, e.g. StanSample.jl, StanDiagnose.jl, etc., is a better choice for day-to-day use. To execute the most important method in Stan ("sample"), use StanSample.jl. Some Pluto notebook examples can be found in the repository. -
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CUDA.jl
CUDA programming in Julia
...JuliaGPU is a GitHub organization created to unify the many packages for programming GPUs in Julia. With its high-level syntax and flexible compiler, Julia is well-positioned to productively program hardware accelerators like GPUs without sacrificing performance. The latest development version of CUDA.jl requires Julia 1.8 or higher. If you are using an older version of Julia, you need to use a previous version of CUDA.jl. This will happen automatically when you install the package using Julia's package manager. -
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Altaxo Data Processing/Plotting Program
Data manipulation and plotting program with scripting
Altaxo is a data manipulation and plotting program written in C# for MS.NET. It is featuring worksheet views and plot views, a scripting language (currently C#) for data processing and automation, import of data from ASCII files or from images, export of graphs and embedding of graphs in other documents. -
DriveStrike: Remote Wipe | Data Breach ProtectionDriveStrike protects devices and data in the event of loss, theft, or use in remote locations. Remotely locate, lock, and wipe devices you manage to prevent data compromise. DriveStrike prevents data breaches to ensure confidentiality, compliance, and a competitive edge.
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OpenSCAD Graph Editor
OpenSCAD Graph Editor
OpenSCAD Graph Editor is a graphical user interface for OpenSCAD that allows you to create 3D models by connecting nodes in a graph. The editor will automatically generate OpenSCAD code for you. It integrates with the OpenSCAD program so you can preview your models in real-time while you are editing the graph. Please check the manual to find out how to install and use the program. -
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luscus
molecular editor and viewer
...The program is developed as a graphical interface for MOLCAS program package, however it's adaptive nature makes possible using luscus with other computational program packages and chemical formats. If you use this program, please cite: G. Kovačević, V. Veryazov, J. Cheminformatics, 7 (2015) 1-10; DOI: 10.1186/s13321-015-0060-z -
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Viking GPS data editor and analyzer
Viking is a free/open source program to manage GPS data
Viking is a free/open source program to manage GPS data. You can import, plot and create tracks, routes and waypoints, show OSM, Bing Aerial and other maps, geotag images, create routes using OSRM, see real-time GPS position (not in Windows), make maps using Mapnik (not in Windows), control items, etc. It is written in mostly in C (with some C++) & the GTK+3 toolkit. -
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Eleana
Program for the analysis of spectroscopic data, in particular EPR(ESR)
Eleana is a program for manipulating, modifying and analyzing various spectroscopic data, in particular electron paramagnetic resonance spectra. It allows you to import data from Bruker spectrometers such as Elexsys or EMX and data from any ASCII file or imported from the clipboard. The program is under constant development, but already has many functions implemented for spectral analysis. -
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Jmol
An interactive viewer for three-dimensional chemical structures.
...Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other quantum chemistry programs. Files can be transferred directly from several databases, including RCSB, EDS, NCI, PubChem, and MaterialsProject. ... -
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MathMod
MathMod is a mathematical modeling software
MathMod is a portable interactive plotting and graphing program for Windows, Linux, MacOSX and many other platforms. MathMod allows to plot 3D mathematical surfaces, described by implicit or parametric equations, and offers a very large database of model samples that can be generated with it. It's Free and Open Source. Change-log for MathMod-13.0 (15/11/2025) 1) Scripts generator to add thickness to iso/parametric surfaces 2) Undo/Redo commands for navigating through previous scripts 3) New scripts, Bug-fixes, code optimization and documentation update For a complete list of changes made during the course of development, please visit: https://github.com/users/parisolab/projects/2 -
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The repository was moved to GitHub https://github.com/htrb/ngraph-gtk User's manual https://htrb.github.io/ngraph-gtk/manual/ Japanese web page https://htrb.github.io/homepage/ngraph/ngraph-gtk.html
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MCE - Marching Cube ELD
Crystallographic software for displaying voxel maps - electron density
MCE is an crystallographic experimental program for 3D and 2D electron density map visualization. The software is mainly focused on visualization of ELD calculated from X-ray diffraction data of small molecules, but it will work for small proteins as well. Download the installation file (default download) or find in "Files" the zip-file with instant copy of the program which does not require the installation. -
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K3DSurf (now MathMod) is a program to visualize and manipulate Mathematical models in three, four, five and six dimensions. K3DSurf supports Parametric equations and Isosurfaces. ****** Welcome to the realm of complex numbers! Change-log for MathMod-11.1 (16/06/2021) 1) Support of graphing functions with complex numbers Z=u+iv in 3D and 4D spaces (demo scripts: "Complex3D_xx" and "Complex4D_Saddle") 2) Added support for HSV (hue, saturation, brightness) coloring model (script: "Complex_Domain_Coloring") 3) Texture definitions (RGB and HSV) for parametric surfaces can now be expressed as functions of complex numbers 4) Added a software implementation for the OpenGL variable gl_FrontFacing (fixed an issue with GPU drivers on MacOSX Catalina). ...
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OmicsSuite
OmicsSuite: a suite for multi-omics analysis and visualization.
OmicsSuite (https://github.com/OmicsSuite/, https://omicssuite.github.io), original name BioSciTools, a desktop program developed based on Java 11, aims to make new exploration and contribution to the development of bioinformatics, and realize data analysis and visualization in the fields of sequence analysis, multimomics (transcriptomics, genomics, protein omics, metabonomics, single cell), microbiology, clinical, etc. The program inherits the excellent interactive components, perfect analysis function and beautiful operation interface of HiPlot (https://hiplot.cn), which I developed based VUE.js and Node.js, etc. -
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RLPlot is a scientific plotting program to produce high quality graphs from data. It is a cross platform development written in C/C++ and may be compiled under Windows32 or Linux. RLPlot for Linux uses Trolltech's Qt.
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Charmol
Program for molecular graphics
Charmol is a cross-platform GUI/command-line based program for making high-quality pictures of molecular structures, nowadays working on Linux, MacOS and Windows. As output, it produces POV-Ray rendered images or files in VRML format. Charmol is capable of making pictures containing: - from small- to large-size molecules - more molecules together (different settings possible) - orbitals using molden and fchk files (GTO functions up to 'h' angular momentum supported) - surfaces using gaussian cube files (also color-mapped surfaces according to potential) - schematic representation of vibrations using arrows - user-defined arrows representing vectorial properties - measuring gauges - combinations of these features (more orbitals together, orbitals and arrows together etc.) ... -
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Windows Plot (wplot)
Windows Ploting Software
Windows ploting (wplot) Software wplot is a quick and easy to use Windows GUI software program for quickly creating and analyzing data plots. Create plots with millions of data points in seconds. Once the data is plotted you can easily use the many tools to explore your plot in great detail by zooming in/out, scrolling your plot and much more. Mutiple objects (data files/sets) can be plotted and overlaid. Objects can be individually hidden/viewed as the plot is studied. ... -
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XLibraryDisplay
A sequence analysis tool for protein engineering
XLibraryDisplay is an intuitive sequence analysis program optimized for protein engineering. It is ideal for all directed evolution platforms including phage, ribosome, and yeast display. Analysis can be quickly done on hundreds to thousands of sequences. Best suited for Sanger sequencing. Requirements: Microsoft Windows XP, 7, 8, or 10 and Excel 2007, 2010, 2013, or 2016 Described in Stafford et al JCIM 2014: http://pubs.acs.org/doi/abs/10.1021/ci500362s -
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A program by Frederik De Kegel, to control a model rail road with the Intellibox of Uhlenbrock and Modeltreno. Een programma van Frederik De Kegel, om een modeltrein te besturen met de Intellibox van Uhlenbrock en Modeltreno.
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DataMelt
Computation and Visualization environment
DataMelt (or "DMelt") is an environment for numeric computation, data analysis, computational statistics, and data visualization. This Java multiplatform program is integrated with several scripting languages such as Jython (Python), Groovy, JRuby, BeanShell. DMelt can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. Linear, non-linear and symbolic regression are also available. ...
