Search Results for "using" - Page 5
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Showing 424 open source projects for "using"
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Mixed-effects models in Julia
A Julia package for fitting (statistical) mixed-effects models
...A mixed-effects model is a statistical model for a response variable as a function of one or more covariates. For a categorical covariate the coefficients associated with the levels of the covariate are sometimes called effects, as in "the effect of using Treatment 1 versus the placebo". If the potential levels of the covariate are fixed and reproducible, e.g. the levels for Sex could be "F" and "M", they are modeled with fixed-effects parameters. If the levels constitute a sample from a population, e.g. the Subject or the Item at a particular observation, they are modeled as random effects. -
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Convex.jl
A Julia package for disciplined convex programming
Convex.jl is a Julia package for Disciplined Convex Programming (DCP). Convex.jl makes it easy to describe optimization problems in a natural, mathematical syntax, and to solve those problems using a variety of different (commercial and open-source) solvers. Convex.jl works by transforming the problem—which possibly has nonsmooth, nonlinear constructions like the nuclear norm, the log determinant, and so forth—into a linear optimization problem subject to conic constraints. This reformulation often involves adding auxiliary variables and is called an "extended formulation", since the original problem has been extended with additional variables. ... -
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Luxor
Simple drawings using vector graphics; Cairo "for tourists!"
Luxor is a Julia package for drawing simple static 2D vector graphics. It provides basic drawing functions and utilities for working with shapes, polygons, clipping masks, PNG and SVG images, turtle graphics, and simple animations. The focus of Luxor is on simplicity and ease of use: it should be easier to use than plain Cairo.jl, with shorter names, fewer underscores, default contexts, and simplified functions. For more complex and sophisticated graphics in 2D and 3D, Makie.jl is the best... -
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Optimization.jl
Mathematical Optimization in Julia
Optimization.jl provides the easiest way to create an optimization problem and solve it. It enables rapid prototyping and experimentation with minimal syntax overhead by providing a uniform interface to >25 optimization libraries, hence 100+ optimization solvers encompassing almost all classes of optimization algorithms such as global, mixed-integer, non-convex, second-order local, constrained, etc. It allows you to choose an Automatic Differentiation (AD) backend by simply passing an... -
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ForwardDiff.jl
Forward Mode Automatic Differentiation for Julia
ForwardDiff implements methods to take derivatives, gradients, Jacobians, Hessians, and higher-order derivatives of native Julia functions (or any callable object, really) using forward mode automatic differentiation (AD). While performance can vary depending on the functions you evaluate, the algorithms implemented by ForwardDiff generally outperform non-AD algorithms (such as finite-differencing) in both speed and accuracy. Functions like f which map a vector to a scalar are the best case for reverse-mode automatic differentiation, but ForwardDiff may still be a good choice if x is not too large, as it is much simpler. ... -
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see
Visualisation toolbox for beautiful and publication-ready figures
see is an R package that serves as the visualization component of the easystats ecosystem, providing plotting utilities to produce publication-ready visualizations of statistical model parameters, diagnostics, predictions, and performance metrics. It works in conjunction with other easystats packages (such as parameters, performance, modelbased, bayestestR, etc.) to convert model outputs or summary objects into visual forms (dot-and-whisker plots, diagnostic plots, residual plots, etc.). It... -
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ParallelStencil.jl
Package for writing high-level code for parallel stencil computations
ParallelStencil empowers domain scientists to write architecture-agnostic high-level code for parallel high-performance stencil computations on GPUs and CPUs. Performance similar to CUDA C / HIP can be achieved, which is typically a large improvement over the performance reached when using only CUDA.jl or AMDGPU.jl GPU Array programming. For example, a 2-D shallow ice solver presented at JuliaCon 2020 [1] achieved a nearly 20 times better performance than a corresponding GPU Array programming implementation; in absolute terms, it reached 70% of the theoretical upper performance bound of the used Nvidia P100 GPU, as defined by the effective throughput metric, T_eff. ... -
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CxxWrap
Package to make C++ libraries available in Julia
This package aims to provide a Boost. Python-like wrapping for C++ types and functions to Julia. The idea is to write the code for the Julia wrapper in C++, and then use a one-liner on the Julia side to make the wrapped C++ library available there. The mechanism behind this package is that functions and types are registered in C++ code that is compiled into a dynamic library. This dynamic library is then loaded into Julia, where the Julia part of this package uses the data provided through a... -
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PySR
High-Performance Symbolic Regression in Python and Julia
...The details of these algorithms are described in the PySR paper. Symbolic regression works best on low-dimensional datasets, but one can also extend these approaches to higher-dimensional spaces by using "Symbolic Distillation" of Neural Networks, as explained in 2006.11287, where we apply it to N-body problems. Here, one essentially uses symbolic regression to convert a neural net to an analytic equation. Thus, these tools simultaneously present an explicit and powerful way to interpret deep neural networks. -
Nonprofit Budgeting SoftwareMartus' collaborative and easy-to-use budgeting and reporting platform will save you hundreds of hours each year. It's designed to make the entire budgeting process easier and create unlimited financial transparency.
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OrientDB
DBMS supporting graph, document, full-text and geospatial models
...Thanks to the SQL layer it's straightforward to use for people skilled in the Relational world. OrientDB adheres to the NoSQL movement even though it supports ACID Transactions and SQL as query language. In this way it's easy to start using it without having to learn too much new stuff. -
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Pkg Julia
Package manager for the Julia programming language
...If you’ve ever tried to run code you haven’t used in a while only to find that you can’t get anything to work because you’ve updated or uninstalled some of the packages your project was using, you’ll understand the motivation for this approach. In Pkg, since each project maintains its own independent set of package versions, you’ll never have this problem again. Moreover, if you check out a project on a new system, you can simply materialize the environment described by its manifest file and immediately be up and running. -
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awesome-single-cell
Community-curated list of software packages and data resources
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. List of software packages (and the people developing these methods) for single-cell data analysis, including RNA-seq, ATAC-seq, etc. Rapid, accurate and memory-frugal preprocessing of single-cell and single-nucleus RNA-seq data. Find bimodal, unimodal, and multimodal features in your data. Ascend is an R package comprised of fast, streamlined analysis functions optimized to... -
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IPyPlot
Fast and efficient plotting of images inside Python Notebooks
IPyPlot is a small python package offering fast and efficient plotting of images inside Python Notebooks. It's using IPython with HTML for faster, richer and more interactive way of displaying big numbers of images. -
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InteractiveErrors.jl
Interactive error messages for the Julia REPL
Interactive error messages for the Julia REPL. Just start using your REPL normally. Once you hit an error you'll be presented with an interactive tree representing your stacktrace which you can explore. To turn interactive errors off and return to using normal stack traces call toggle(). Call toggle() again to turn it back on. Press up and down arrows to move through the stacktrace. Press space to fold or unfold the currently selected line. -
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GeoServer is an open source software server written in Java that allows users to share and edit geospatial data. Designed for interoperability, it publishes data from any major spatial data source using open standards: WMS, WFS, WCS, WPS and REST
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Bayesian Julia
Bayesian Statistics using Julia and Turing
Bayesian statistics is an approach to inferential statistics based on Bayes' theorem, where available knowledge about parameters in a statistical model is updated with the information in observed data. The background knowledge is expressed as a prior distribution and combined with observational data in the form of a likelihood function to determine the posterior distribution. The posterior can also be used for making predictions about future events. Bayesian statistics is a departure from... -
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Viking GPS data editor and analyzer
Viking is a free/open source program to manage GPS data
Viking is a free/open source program to manage GPS data. You can import, plot and create tracks, routes and waypoints, show OSM, Bing Aerial and other maps, geotag images, create routes using OSRM, see real-time GPS position (not in Windows), make maps using Mapnik (not in Windows), control items, etc. It is written in mostly in C (with some C++) & the GTK+3 toolkit. Viking is currently dual managed - with a corresponding Github presence at: https://github.com/viking-gps/viking Where you may find it easier to view the code and raise issues there too. -
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Drawj2d
Draw vector graphics to scale using a descriptive language
Drawj2d creates technical line drawings using a descriptive language. It writes pdf, svg, eps, emf and dxf vector graphics or png images. It runs on all platforms that run Java. It is inspired by Asymptote but with a tcl-like syntax and 2D only. -
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dxf2gcode
DXF2GCODE: converting 2D dxf drawings to CNC machine compatible G-Code
DXF2GCODE is a tool for converting 2D (dxf, pdf, ps) drawings to CNC machine compatible GCode. Windows, Linux, and Mac support by using python scripting language. -
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GeoTools, the Java GIS toolkit
Toolkit for working with and mapping geospatial data
GeoTools is an open source (LGPL) Java code library which provides standards compliant methods for the manipulation of geospatial data. GeoTools is an Open Source Geospatial Foundation project. The GeoTools library data structures are based on Open Geospatial Consortium (OGC) specifications. -
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Billiards Covers
This zip jar contains the current coverings of periodic paths.
Researchers, Mathematicians and Enthusiasts. Download "Billiards Covers" to see the most current list of periodic paths in triangles. Download "Billiards Everything" to discover new periodic billiard paths, an unresolved problem from 1775! Follow "The Great Periodic Path Hunt" at gwtokarsky.github.io for the latest news. Email tokarsky@ualberta.ca for feedback. -
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atomes
Analysis, visualization, edition of 3D atomistic models
...atomes is a toolbox developed to analyze, to visualize and to create/edit three-dimensional atomistic models. atomes also provides an advanced input preparation system for further calculations using well known molecular dynamics codes: - Classical MD : DL-POLY and LAMMPS - ab-initio MD : CPMD and CP2K - QM-MM MD : CPMD and CP2K atomes is developed by Dr. Sébastien Le Roux, research engineer for the CNRS Dr. Sébastien Le Roux works at the Institut de Physique et Chimie des Matériaux de Strasbourg. -
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A python-based system to diagnosis and make weather maps (wxmap) of numerical weather prediction models using the Grid Analysis and Display System (GrADS) from opengrads.org
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luscus
molecular editor and viewer
...In addition, simple geometrical objects can be rendered in order to point out a geometrical feature or a physical quantity. The program is developed as a graphical interface for MOLCAS program package, however it's adaptive nature makes possible using luscus with other computational program packages and chemical formats. If you use this program, please cite: G. Kovačević, V. Veryazov, J. Cheminformatics, 7 (2015) 1-10; DOI: 10.1186/s13321-015-0060-z -
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Charmol
Program for molecular graphics
...Charmol is capable of making pictures containing: - from small- to large-size molecules - more molecules together (different settings possible) - orbitals using molden and fchk files (GTO functions up to 'h' angular momentum supported) - surfaces using gaussian cube files (also color-mapped surfaces according to potential) - schematic representation of vibrations using arrows - user-defined arrows representing vectorial properties - measuring gauges - combinations of these features (more orbitals together, orbitals and arrows together etc.) ...
