Search Results for "project-open" - Page 31
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Showing 1932 open source projects for "project-open"
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SBML2LaTeX
A documentation and report generator for systems biological models
SBML2LATEX is a tool to convert files in the System Biology Markup Language SBML) format into LATEX files. A convenient online version is available, which allows the user to directly generate report from SBML in form of PDF or TeX, which can be further processed to various file types including DVI, PS, EPS, GIF, JPG, or PNG. SBML2LATEX can also be downloaded and used locally in batch mode or interactively with its Graphical User Interface or several command line options. The purpose of... -
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MDPP
The Biozentrum Micrograph Data Processing Program (MDPP)
MDPP is an image processing package designed for micrograph data. It contains program to process data in a number of ways including many averaging methods, statistical methods and reconstruction schemes. The programs are not limited to micrograph data of course, but can be applied to images of all types. -
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Flame Graphs
Stack trace visualizer
Flame graphs are a visualization of profiled software, allowing the most frequent code-paths to be identified quickly and accurately. They can be generated using my open source programs, which create interactive SVGs. See the Updates section for other implementations. Recently I've been helping with d3-flame-graph. The x-axis shows the stack profile population, sorted alphabetically (it is not the passage of time), and the y-axis shows stack depth, counting from zero at the bottom. Each rectangle represents a stack frame. ... -
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Canvas-2DGC
A user-extensible Freemat based 1DGC and GCxGC data analysis software.
Canvas-2DGC is a user-extensible, Freemat based 1DGC and comprehensive 2DGC (GCxGC) data visualization and processing software. GCxGC-MS data analysis is supported for Agilent GCMS data format. The first goal of this project is to provide a highly intelligent analytical tool for reducing a complex chromatographic data analysis, either 1D or 2D, to just a few simple and intuitive steps. The second goal is to provide a fast and practical way of customizing or extending functionalities by ordinary users through high-level Freemat scripting. Freemat, one of open source Matlab clones, is chosen for this very purpose, because its syntax is most compatible with Matlab and it is lightweight - very suited for ordinary users. ... -
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A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
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ctioga2
polymorphic plotting program
ctioga2 is a plotting program in the spirit of gnuplot. It can be used either directly on command-line or writing command files (or a mix of both). It produces publication-quality PDF files. It is based on the Tioga plotting library. -
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This is a very simple OpenGL visualization library with a 3D and 4D volume renderer. It can easily be reused in other projects (e.g. with medical volumes). It is just perfect for learning or great if you like to hack your own code.
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vizceral
WebGL visualization for displaying animated traffic graphs
...There are three levels of information, global, regional, and service-level, with clicking or double-clicking on a node bringing you one level deeper. We are not using this internally at Netflix at this time and the project is not actively being worked on. We occasionally look at the repo and will review PRs as time permits. Current development focuses on a most recent version of Chrome. Minor sanity checking for the latest versions of Safari and Firefox. -
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Freemat is an interpreted, matrix-oriented development environment for engineering and scientific applications, similar to the commercial package MATLAB. Freemat provides visualization, image manipulation, and plotting as well as parallel programming.
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React Trend
Simple, elegant spark lines
Unfortunately, none of this project's authors have the time/enthusiasm to maintain this project right now. We recommend forking this project, or reading its source to learn how it's built). Graphing tools are often complex, abstract, and heavy. They require domain-specific knowledge and significant time investment. While building rich data visualizations for an analytics app, is a necessary cost. But what if you just need a sparkline that shows a trend? -
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OpenGL based , OS-independent C++ library for the presentation of visual stimuli in Neuroscience experiments.
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Maui
Maui is the Maltcms User Interface
Maui is the Maltcms User Interface, a rich client application for Chromatography-Mass Spectrometry and related research areas. -
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Kinetic Model Builder
GUI for building, simulating and optimizing kinetic models.
A 3D graphical interface for building, simulating and optimizing Markov kinetic models in response to user defined time dependent stimuli. Models can be represented as either states and connecting transitions or interacting allosteric elements (see http://dx.doi.org/10.1085/jgp.201411183). Model parameters can be optimized by fitting model responses to user data. Optional user defined constraint equations for model parameters are parsed with EigenLab... -
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Excel to Graphviz
Create graphviz diagrams with excel
Free, easy to use, excel tool to create data and process flow diagrams with table data In separate excel sheets you define items(nodes), lines(edges) and grouping(clusters) Separate definition of node, edge and cluster styles Graph settings sheet Output control sheet Examples and readme are included in the zip file Get it working: -Install graphviz (http://graphviz.org/Download.php) -Download Excel to Graphviz -Open one of the ExcelToGraphviz workbooks -Go to sheet settings and update "dotpath" to where graphviz' dot.exe was installed (e.g. C:\Program Files (x86)\Graphviz2.38\bin\dot.exe) -Generate the flow diagram with cntrl-M -Import from older version with cntrl-I This tool was initially made to show the usefulness of a service registry or service catalog in an enterprise integration environment. ... -
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ViTables, a GUI for PyTables
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Illustrated Algorithms
Interactive algorithm visualizations
...Literally the same source file. Going back and forth between function execution (and call stack when algorithm uses recursion) is effortless. So is pausing and resuming. This project uses styled-jsx, but takes the idea of CSS-in-JS even further. Sizing, positioning and transition offsets are computed by JS, all before elements hit the DOM. -
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Egonet is a program for the collection and analysis of egocentric network data. It helps you create the questionnaire, collect data, and provide general global network measures and data matrixes that can be used for further analysis by other software. Source code is hosted at http://github.com/egonet/egonet.
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GeOxygene aims at providing an open framework which implements OGC/ISO specifications for the development and deployment of geographic (GIS) applications. It is a open source contribution of the COGIT lab. at the IGN (the French National Mapping Agency).
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ipytracer
Algorithm Visualizer for IPython/Jupyter Notebook
Algorithm Visualizer for IPython/Jupyter Notebook. If you use the display(TracerObject) code from where you want to see, you can use it without any special modification. -
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ImagingAnalysis
Direct tissue-level image quantification package for Mathematica
ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0. Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11. -
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RoadRunner represents a state-of-the-art simulation library for SBML models. It is fast, portable and accurate. This projects hosts the library and tools using the library.
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Matplotlib is a python library for making publication quality plots using a syntax familiar to MATLAB users. Matplotlib uses numpy for numerics. Output formats include PDF, Postscript, SVG, and PNG, as well as screen display. As of matplotlib version 1.5, we are no longer making file releases available on SourceForge. Please visit http://matplotlib.org/users/installing.html for help obtaining matplotlib.
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ngx-datatable
A feature-rich yet lightweight data-table crafted for Angular
...The table was designed to be extremely flexible and light; it doesn't make any assumptions about your data or how you: filter, sort or page it. It was built for modern browsers using TypeScript, CSS3 and HTML5 and Angular 8.0.0. This is the sister project of the angular-data-table that is designed for Angular 1.x. Intelligent Column Width Algorithms (Force-fill & Flex-grow). Fixed AND Fluid height. Left and Right Column Pinning. Row Detail View. Decoupled theme'ing with included Google Material theme. Light codebase / No external dependencies. AoT Compilation Support. Universal Support. ... -
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Krisk
Statistical Interactive Visualization with pandas+Jupyter integration
Krisk brings Echarts to the Python Data Science Ecosystem, and helpful tools for high-level statistical interactive visualization. -
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Coastline Evolution Model
Modified version of the Coastline Evolution Model (CEM)
...The original CEM has no Graphical User Interface (GUI) and does not provide graphical visualisations during model runs. The modified version given here includes these features. This project forms part of a wider research project and further developments on this model are anticipated.