Open Source Linux Data Visualization Software - Page 8
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CUDAnative.jl
Julia support for native CUDA programming
The programming support for NVIDIA GPUs in Julia is provided by the CUDA.jl package. It is built on the CUDA toolkit and aims to be as full-featured and offer the same performance as CUDA C. The toolchain is mature, has been under development since 2014, and can easily be installed on any current version of Julia using the integrated package manager. -
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CausalityTools.jl
Algorithms for detecting associations, dynamical influences
CausalityTools.jl is a package for quantifying associations and dynamical coupling between datasets, independence testing, and causal inference. Association measures from conventional statistics, information theory, and dynamical systems theory, for example, distance correlation, mutual information, transfer entropy, convergent cross mapping and a lot more. A dedicated API for independence testing, which comes with automatic compatibility with every measure-estimator combination you can think of. For example, we offer the generic SurrogateTest, which is fully compatible with TimeseriesSurrogates.jl, and the LocalPermutationTest for conditional independence testing. -
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Charts.css
Open source CSS framework for data visualization
Charts.css is a modern CSS framework. It uses CSS utility classes to style HTML elements as charts. No dependencies. 72kb file size. Less than 6kb gzipped file size! Visualization helps end-users understand data. Charts.css help frontend developers turn data into beautiful charts and graphs using simple CSS classes. The data is structured using semantic HTML tags and styled using CSS classes which change the visual representation displayed to the end-user. The framework offers developers flexibility. You choose what components to display and how to style them. Each component offers several CSS classes and CSS variables to customize your style. The key feature is the ability to customize everything using basic CSS. Frontend developers can target any HTML element and customize it. This philosophical guideline is what makes the framework so flexible, easy, and fun to use. -
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Circuitscape.jl
Algorithms from circuit theory to predict connectivity
Circuitscape is an open-source program that uses circuit theory to model connectivity in heterogeneous landscapes. Its most common applications include modeling the movement and gene flow of plants and animals, as well as identifying areas important for connectivity conservation. The new Circuitscape is built entirely in the Julia language, a new programming language for technical computing. Julia is built from the ground up to be fast. As such, this offers a number of advantages over the previous version. -
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ConcurrentSim.jl
Discrete event process oriented simulation framework written in Julia
A discrete event process-oriented simulation framework written in Julia inspired by the Python library SimPy. One of the longest-lived Julia packages (originally under the name SimJulia). -
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Conda.jl
https://github.com/JuliaPy/Conda.jl
This package allows one to use conda as a cross-platform binary provider for Julia for other Julia packages, especially to install binaries that have complicated dependencies like Python. conda is a package manager that started as the binary package manager for the Anaconda Python distribution, but it also provides arbitrary packages. Instead of the full Anaconda distribution, Conda.jl uses the miniconda Python environment, which only includes conda and its dependencies. -
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ConstraintSolver.jl
ConstraintSolver in Julia
This package aims to be a constraint solver completely written in Julia. The concepts are more or less fully described on my blog OpenSourc.es. There is of course also the general user manual here which explains how to solve your model. -
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Convex.jl
A Julia package for disciplined convex programming
Convex.jl is a Julia package for Disciplined Convex Programming (DCP). Convex.jl makes it easy to describe optimization problems in a natural, mathematical syntax, and to solve those problems using a variety of different (commercial and open-source) solvers. Convex.jl works by transforming the problem—which possibly has nonsmooth, nonlinear constructions like the nuclear norm, the log determinant, and so forth—into a linear optimization problem subject to conic constraints. This reformulation often involves adding auxiliary variables and is called an "extended formulation", since the original problem has been extended with additional variables. These formulations rely on the problem being modeled by combining Convex.jl's "atoms" or primitives according to certain rules which ensure convexity, called the disciplined convex programming (DCP) ruleset. If these atoms are combined in a way that does not ensure convexity, the extended formulations are often invalid. -
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CounterfactualExplanations.jl
A package for Counterfactual Explanations and Algorithmic Recourse
CounterfactualExplanations.jl is a package for generating Counterfactual Explanations (CE) and Algorithmic Recourse (AR) for black-box algorithms. Both CE and AR are related tools for explainable artificial intelligence (XAI). While the package is written purely in Julia, it can be used to explain machine learning algorithms developed and trained in other popular programming languages like Python and R. See below for a short introduction and other resources or dive straight into the docs. -
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Coverage.jl
Take Julia code coverage and memory allocation results, do useful thin
Julia can track how many times, if any, each line of your code is run. This is useful for measuring how much of your code base your tests actually test, and can reveal the parts of your code that are not tested and might be hiding a bug. You can use Coverage.jl to summarize the results of this tracking or to send them to a service like Coveralls.io or Codecov.io. Julia can track how much memory is allocated by each line of your code. This can reveal problems like type instability, or operations that you might have thought were cheap (in terms of memory allocated) but aren't (i.e. accidental copying). -
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DataFrames.jl
In-memory tabular data in Julia
DataFrames.jl is a powerful Julia package for working with in-memory tabular data. It provides a familiar, flexible, and efficient interface for handling datasets, making it easy to load, manipulate, join, and analyze structured data. With syntax inspired by data frames in R and pandas in Python, it offers intuitive tools while taking advantage of Julia’s speed and type system. The package is actively maintained by the JuliaData community, with contributions from over 200 developers worldwide. It is widely used for data science, research, and production applications, supported by extensive documentation, tutorials, and a free Julia Academy course. Cited in academic literature and trusted by practitioners, DataFrames.jl is one of the core libraries for Julia’s growing data ecosystem. -
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DataVoyager.jl
Julia wrapper for the Voyager data exploration tool
This package provides Julia integration for the Voyager data exploration tool. DataVoyager.jl can be used for data exploration. It can help you visualize and understand any data that is in a tabular format. -
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DiffEqBayes.jl
Extension functionality which uses Stan.jl, DynamicHMC.jl
This repository is a set of extension functionality for estimating the parameters of differential equations using Bayesian methods. It allows the choice of using CmdStan.jl, Turing.jl, DynamicHMC.jl and ApproxBayes.jl to perform a Bayesian estimation of a differential equation problem specified via the DifferentialEquations.jl interface. -
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DynamicHMC
Implementation of robust dynamic Hamiltonian Monte Carlo methods
Implementation of robust dynamic Hamiltonian Monte Carlo methods in Julia. In contrast to frameworks that utilize a directed acyclic graph to build a posterior for a Bayesian model from small components, this package requires that you code a log-density function of the posterior in Julia. Derivatives can be provided manually, or using automatic differentiation. Consequently, this package requires that the user is comfortable with the basics of the theory of Bayesian inference, to the extent of coding a (log) posterior density in Julia. This approach allows the use of standard tools like profiling and benchmarking to optimize its performance. -
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EAGO.jl
A development environment for robust and global optimization
EAGO is an open-source development environment for robust and global optimization in Julia. EAGO is a deterministic global optimizer designed to address a wide variety of optimization problems, emphasizing nonlinear programs (NLPs), by propagating McCormick relaxations along the factorable structure of each expression in the NLP. Most operators supported by modern automatic differentiation (AD) packages (e.g., +, sin, cosh) are supported by EAGO and a number of utilities for sanitizing native Julia code and generating relaxations on a wide variety of user-defined functions have been included. Currently, EAGO supports problems that have a priori variable bounds defined and have differentiable constraints. -
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ExplainableAI.jl
Explainable AI in Julia
This package implements interpretability methods for black box models, with a focus on local explanations and attribution maps in input space. It is similar to Captum and Zennit for PyTorch and iNNvestigate for Keras models. Most of the implemented methods only require the model to be differentiable with Zygote. Layerwise Relevance Propagation (LRP) is implemented for use with Flux.jl models. -
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ExponentialUtilities.jl
Fast and differentiable implementations of matrix exponentials
ExponentialUtilities is a package of utility functions for matrix functions of exponential type, including functionality for the matrix exponential and phi-functions. These methods are more numerically stable, generic (thus support a wider range of number types), and faster than the matrix exponentiation tools in Julia's Base. The tools are used by the exponential integrators in OrdinaryDiffEq. The package has no external dependencies, so it can also be used independently. -
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EzXML.jl
XML/HTML handling tools for primates
EzXML.jl is a package to handle XML/HTML documents for primates. This package depends on libxml2, which will be automatically installed as an artifact via XML2_jll.jl if you use Julia 1.3 or later. Currently, Windows, Linux, macOS, and FreeBSD are now supported. -
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Finch.jl
Sparse tensors in Julia and more
Finch is a cutting-edge Julia-to-Julia compiler specially designed for optimizing loop nests over sparse or structured multidimensional arrays. Finch empowers users to write conventional for loops which are transformed behind-the-scenes into fast sparse code. -
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FrankWolfe.jl
Julia implementation for various Frank-Wolfe and Conditional Gradient
This package is a toolbox for Frank-Wolfe and conditional gradient algorithms. Frank-Wolfe algorithms were designed to solve optimization problems where f is a differentiable convex function and C is a convex and compact set. They are especially useful when we know how to optimize a linear function over C in an efficient way. -
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Functors.jl
Parameterise all the things
Functors.jl provides tools to express a powerful design pattern for dealing with large/ nested structures, as in machine learning and optimization. For large machine learning models, it can be cumbersome or inefficient to work with parameters as one big, flat vector, and structs help manage complexity; but it is also desirable to easily operate over all parameters at once, e.g. for changing precision or applying an optimizer update step. -
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G2
Interactive data-driven visualization grammar for statistical charts
G2 is a highly interactive data-driven visualization grammar for statistical charts. with a high level of usability and scalability. It provides a set of grammar, and takes users beyond a limited set of charts to an almost unlimited world of graphical forms. With G2, you can describe the visual appearance and interactive behavior of visualization just by one statement, and generate web-based views using Canvas or SVG. We have summarized a series of story design templates from lots of real data visualization cases so that users can use them directly. Any chart can be drawn flexibly based on graphical grammar to meet your unlimited creativity. A large number of product practices, providing a graphics engine, complete graphical grammar, and professional design specifications.Powerful interactive grammar to help visual analysis and make charts vivid. -
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GemGIS
Spatial data processing for geomodeling
GemGIS is a Python-based, open-source geographic information processing library. It is capable of preprocessing spatial data such as vector data (shape files, geojson files, geopackages,…), raster data (tif, png,…), data obtained from online services (WCS, WMS, WFS) or XML/KML files (soon). Preprocessed data can be stored in a dedicated Data Class to be passed to the geomodeling package GemPy in order to accelerate the model-building process. Postprocessing of model results will allow export from GemPy to geoinformation systems such as QGIS and ArcGIS or to Google Earth for further use. -
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GeophysicalFlows.jl
Geophysical fluid dynamics pseudospectral solvers with Julia
GeophysicalFlows.jl is a collection of modules that leverage the FourierFlows.jl framework to provide solvers for problems in Geophysical Fluid Dynamics, on periodic domains using Fourier-based pseudospectral methods. -
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HyperTools
A Python toolbox for gaining geometric insights
HyperTools is a library for visualizing and manipulating high-dimensional data in Python. It is built on top of matplotlib (for plotting), seaborn (for plot styling), and scikit-learn (for data manipulation). Functions for plotting high-dimensional datasets in 2/3D. Static and animated plots. Simple API for customizing plot styles. Set of powerful data manipulation tools including hyperalignment, k-means clustering, normalizing and more. Support for lists of Numpy arrays, Pandas dataframes, text or (mixed) lists. Applying topic models and other text vectorization methods to text data. HyperTools is designed to facilitate dimensionality reduction-based visual explorations of high-dimensional data. The basic pipeline is to feed in a high-dimensional dataset (or a series of high-dimensional datasets) and, in a single function call, reduce the dimensionality of the dataset(s) and create a plot.