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Compat.jl
Compatibility across Julia versions
The Compat package is designed to ease interoperability between older and newer versions of the Julia language. In particular, in cases where it is impossible to write code that works with both the latest Julia master branch and older Julia versions, or impossible to write code that doesn't generate a deprecation warning in some Julia version, the Compat package provides a macro that lets you use the latest syntax in a backward-compatible way. This is primarily intended for use by other... -
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NCDatasets.jl
Load and create NetCDF files in Julia
NCDatasets allows one to read and create netCDF files. NetCDF data set and attribute list behave like Julia dictionaries and variables like Julia arrays. This package implements the CommonDataModel.jl interface, which means that the datasets can be accessed in the same way as GRIB files opened with GRIBDatasets.jl. -
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SimpleTraits.jl
Simple Traits for Julia
This package provides a macro-based implementation of traits, using Tim Holy's trait trick. The main idea behind traits is to group types outside the type-hierarchy and to make dispatch work with that grouping. The difference to Union-types is that types can be added to a trait after the creation of the trait, whereas Union types are fixed after creation. The cool thing about Tim's trick is that there is no performance impact compared to using ordinary dispatch. For a bit of background and a... -
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ComponentArrays.jl
Arrays with arbitrarily nested named components
The main export of this package is the ComponentArray type. "Components" of ComponentArrays are really just array blocks that can be accessed through a named index. This will create a new ComponentArray whose data is a view into the original, allowing for standalone models to be composed together by simple function composition. In essence, ComponentArrays allow you to do the things you would usually need a modeling language for, but without actually needing a modeling language. The main... -
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ReverseDiff
Reverse Mode Automatic Differentiation for Julia
ReverseDiff is a fast and compile-able tape-based reverse mode automatic differentiation (AD) that implements methods to take gradients, Jacobians, Hessians, and higher-order derivatives of native Julia functions (or any callable object, really). While performance can vary depending on the functions you evaluate, the algorithms implemented by ReverseDiff generally outperform non-AD algorithms in both speed and accuracy. -
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Unitful.jl
Physical quantities with arbitrary units
Unitful is a Julia package for physical units. We want to support not only SI units but also any other unit system. We also want to minimize or in some cases eliminate the run-time penalty of units. There should be facilities for dimensional analysis. All of this should integrate easily with the usual mathematical operations and collections that are found in Julia base. -
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ClimateTools.jl
Climate science package for Julia
Climate analysis tools in Julia. ClimateTools.jl is a collection of commonly-used tools in Climate science. Basics of climate field analysis are covered, with some forays into exploratory techniques associated with climate scenario design. The package is aimed to ease the typical steps of analysis of climate models outputs and gridded datasets (support for weather stations is a work-in-progress). Climate indices and bias correction functions are coded to leverage the use of multiple threads.... -
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Mixed-effects models in Julia
A Julia package for fitting (statistical) mixed-effects models
This package defines linear mixed models (LinearMixedModel) and generalized linear mixed models (GeneralizedLinearMixedModel). Users can use the abstraction for statistical model API to build, fit (fit/fit!), and query the fitted models. A mixed-effects model is a statistical model for a response variable as a function of one or more covariates. For a categorical covariate the coefficients associated with the levels of the covariate are sometimes called effects, as in "the effect of using... -
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vim‑sneak
The missing motion for Vim
vim‑sneak is a minimalist yet powerful navigation plugin for Vim, designed to jump to any location specified by two characters. It maintains compatibility with Vim's operators, macros, visual mode, repeat (.), and supports multibyte text. It provides intuitive highlights that disappear once the jump is completed. Sneak has <Plug> mappings for f and t 1-character-sneak. These mappings do not invoke label-mode, even if you have it enabled. Highlights matches in the direction of your search.... -
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Vulkan.jl
Using Vulkan from Julia
Vulkan.jl is a lightweight wrapper around the Vulkan graphics and compute library. It exposes abstractions over the underlying C interface, primarily geared toward developers looking for a more natural way to work with Vulkan with minimal overhead. It builds upon the core API provided by VulkanCore.jl. Because Vulkan is originally a C specification, interfacing with it requires some knowledge before correctly being used from Julia. This package acts as an abstraction layer, so that you don't... -
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Rotations.jl
Julia implementations for different rotation parameterizations
3D rotations made easy in Julia. This package implements various 3D rotation parameterizations and defines conversions between them. At their heart, each rotation parameterization is a 3×3 unitary (orthogonal) matrix (based on the StaticArrays.jl package), and acts to rotate a 3-vector about the origin through matrix-vector multiplication. While the RotMatrix type is a dense representation of a 3×3 matrix, we also have sparse (or computed, rather) representations such as quaternions,... -
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JuliaSyntax
A Julia frontend, written in Julia
A Julia compiler frontend, written in Julia. Read the documentation for more information. JuliaSyntax.jl is used as the new default Julia parser in Julia 1.10. It's highly compatible with Julia's older femtoliter-based parser - It parses all of Base, the standard libraries and the General registry. Some minor differences remain where we've decided to fix bugs or strange behaviors in the reference parser. The AST and tree data structures are usable but their APIs will evolve as we try out... -
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JLD2
HDF5-compatible file format in pure Julia
JLD2 saves and loads Julia data structures in a format comprising a subset of HDF5, without any dependency on the HDF5 C library. JLD2 is able to read most HDF5 files created by other HDF5 implementations supporting HDF5 File Format Specification Version 3.0 (i.e. libhdf5 1.10 or later) and similarly, those should be able to read the files that JLD2 produces. JLD2 provides read-only support for files created with the JLD package. The save and load functions, provided by FileIO, provide a... -
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Tullio.jl
Tullio is a very flexible einsum macro
Tullio is a very flexible einsum macro. It understands many array operations written in index notation -- not just matrix multiplication and permutations, but also convolutions, stencils, scatter/gather, and broadcasting. Used by itself the macro writes ordinary nested loops much like Einsum.@einsum. One difference is that it can parse more expressions, and infer ranges for their indices. Another is that it will use multi-threading (via Threads.@spawn) and recursive tiling, on large enough arrays. -
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POMDPs
Interface for defining, solving, simulating Markov decision processes
A Julia interface for defining, solving and simulating partially observable Markov decision processes and their fully observable counterparts. The POMDPs.jl package contains only the interface used for expressing and solving Markov decision processes (MDPs) and partially observable Markov decision processes (POMDPs). The POMDPTools package acts as a "standard library" for the POMDPs.jl interface, providing implementations of commonly-used components such as policies, belief updaters,... -
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forecast
Forecasting Functions for Time Series and Linear Models
The forecast package is a comprehensive R package for time series analysis and forecasting. It provides functions for building, assessing, and using univariate forecasting models (e.g. ARIMA, exponential smoothing, etc.), tools for automatic model selection, diagnostics, plotting, forecasting future values, etc. It's widely used in statistics, economics, business forecasting, environmental science, etc. Exponential smoothing state space models (ETS) including seasonal components. Residual... -
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ipychart
The power of Chart.js with Python
Create charts with Python in a very similar way to creating charts using Chart.js. The charts created are fully configurable, interactive, and modular and are displayed directly in the output of the cells of your jupyter notebook environment. Charts are fully interactive, you can hover it to display tooltips and select the information you want to see directly from the output cell of your notebook. All the types of charts present in Chart.js are exposed in ipychart. Even complex features such... -
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Kale
Kubeflow’s superfood for Data Scientists
KALE (Kubeflow Automated pipeLines Engine) is a project that aims at simplifying the Data Science experience of deploying Kubeflow Pipelines workflows. Kubeflow is a great platform for orchestrating complex workflows on top Kubernetes and Kubeflow Pipeline provides the mean to create reusable components that can be executed as part of workflows. The self-service nature of Kubeflow make it extremely appealing for Data Science use, at it provides an easy access to advanced distributed jobs... -
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PairPlots.jl
Beautiful and flexible vizualizations of high dimensional data
Beautiful and flexible visualizations of high-dimensional data. This package produces pair plots, otherwise known as corner plots or scatter plot matrices: grids of 1D and 2D histograms that allow you to visualize high-dimensional data. Pair plots are an excellent way to visualize the results of MCMC simulations, but are also a useful way to visualize correlations in general data tables. The default styles of this package roughly reproduce the output of the Python library corner.py for a... -
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JuliaConnectoR
A functionally oriented interface for calling Julia from R
This R-package provides a functionally oriented interface between R and Julia. The goal is to call functions from Julia packages directly as R functions. Julia functions imported via the JuliaConnectoR can accept and return R variables. It is also possible to pass R functions as arguments in place of Julia functions, which allows callbacks from Julia to R. From a technical perspective, R data structures are serialized with an optimized custom streaming format, sent to a (local) Julia TCP... -
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PDMats.jl
Uniform Interface for positive definite matrices of various structures
Uniform interface for positive definite matrices of various structures. Positive definite matrices are widely used in machine learning and probabilistic modeling, especially in applications related to graph analysis and Gaussian models. It is not uncommon that positive definite matrices used in practice have special structures (e.g. diagonal), which can be exploited to accelerate computation. PDMats.jl supports efficient computation on positive definite matrices of various structures. In... -
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CondaPkg.jl
Add Conda dependencies to your Julia project
Add Conda dependencies to your Julia project. This package is a lot like Pkg from the Julia standard library, except that it is for managing Conda packages. Conda dependencies are defined in CondaPkg.toml, which is analogous to Project.toml. CondaPkg will install these dependencies into a Conda environment specific to the current Julia project. Hence dependencies are isolated from other projects or environments. Functions like add, rm, status exist to edit the dependencies programmatically.... -
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JuliaWorkshop
Intensive Julia workshop that takes you from zero to hero
This is an intensive workshop for the Julia language, composed out of three 2-hour segments. It targets people already familiar with programming, so that the established basics such as for-loops are skipped through quickly and efficiently. Nevertheless, it assumes only rudimentary programming familiarity and does explain concepts that go beyond the basics. The goal of the workshop is to take you from zero to hero (regarding Julia): even if you know nothing about Julia, by the end you should... -
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ChainRulesCore
AD-backend agnostic system defining custom forward and reverse rules
AD-backend agnostic system defining custom forward and reverse mode rules. This is the light weight core to allow you to define rules for your functions in your packages, without depending on any particular AD system. The ChainRulesCore package provides a light-weight dependency for defining sensitivities for functions in your packages, without you needing to depend on ChainRules itself. This will allow your package to be used with ChainRules.jl, which aims to provide a variety of common... -
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Bayesian Statistics
This repository holds slides and code for a full Bayesian statistics
This repository holds slides and code for a full Bayesian statistics graduate course. Bayesian statistics is an approach to inferential statistics based on Bayes' theorem, where available knowledge about parameters in a statistical model is updated with the information in observed data. The background knowledge is expressed as a prior distribution and combined with observational data in the form of a likelihood function to determine the posterior distribution. The posterior can also be used...
