Search Results for "documentation" - Page 12
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Showing 328 open source projects for "documentation"
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pycoQC
pycoQC computes metrics and generates Interactive QC plots
PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data. PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generate a summary file from basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+. PycoQC is written in pure Python3. Python 2 is not supported. -
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ClimateMachine.jl
Earth System Model that automatically learns from data
The ClimateMachine is a software package that models the evolution of the Earth system over weeks to centuries. The ClimateMachine solves three-dimensional partial differential equations for the distributions of water, momentum, energy, and tracers such as carbon in the atmosphere, oceans, and on land. The ClimateMachine will harness a wide range of Earth observations and data generated computationally to predict the evolution of Earth’s climate and features such as droughts, rainfall... -
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ElectronDisplay.jl
An Electron.jl based figure and table display.
This package provides a display for figures, plots and tables. When you load the package, it will push a new display onto the Julia display stack and from then on it will display any value that can be rendered as png, svg, vega, vega-lite or plotly in an electron-based window. This is especially handy when one works on the REPL and wants plots or tables to show up in a nice window. -
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Jupytab
Display in Tableau data from Jupyter notebooks
Jupytab allows you to explore in Tableau data which is generated dynamically by a Jupyter Notebook. You can thus create Tableau data sources in a very flexible way using all the power of Python. This is achieved by having Tableau access data through a web server created by Jupytab. -
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ArgCheck.jl
Package for checking function arguments
Package for checking function arguments. @argcheck code is as fast as @assert or a hand written if. That being said it is possible to erase argchecks, much like one can erase bounds checking using @inbounds. This feature is currently experimental. It may be silently changed or removed without increasing the major ArgCheck version number. -
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NLOptControl.jl
nonlinear control optimization tool
This software solves nonlinear control problems at a high level very quickly. -
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repo2docker GitHub Action
A GitHub action to build data science environment images
Trigger repo2docker to build a Jupyter enabled Docker image from your GitHub repository and push this image to a Docker registry of your choice. This will automatically attempt to build an environment from configuration files found in your repository. Images generated by this action are automatically tagged with both latest and <SHA> corresponding to the relevant commit SHA on GitHub. Both tags are pushed to the Docker registry specified by the user. If an existing image with the latest tag... -
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CuArrays.jl
A Curious Cumulation of CUDA Cuisine
CuArrays provides a fully-functional GPU array, which can give significant speedups over normal arrays without code changes. CuArrays are implemented fully in Julia, making the implementation elegant and extremely generic. -
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CUDAnative.jl
Julia support for native CUDA programming
The programming support for NVIDIA GPUs in Julia is provided by the CUDA.jl package. It is built on the CUDA toolkit and aims to be as full-featured and offer the same performance as CUDA C. The toolchain is mature, has been under development since 2014, and can easily be installed on any current version of Julia using the integrated package manager. -
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Cubature.jl
One- and multi-dimensional adaptive integration routines for Julia
This module provides one- and multi-dimensional adaptive integration routines for the Julia language, including support for vector-valued integrands and facilitation of parallel evaluation of integrands, based on the Cubature Package by Steven G. Johnson. Adaptive integration works by evaluating the integrand at more and more points until the integrand converges to a specified tolerance (with the error estimated by comparing integral estimates with different numbers of points). The Cubature... -
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tikzcd-editor
A simple visual editor for creating commutative diagrams
A simple visual editor for creating commutative diagrams. -
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Immerse.jl
Dive deeper into your data with interactive graphics
Dive deeper into your data with interactive graphics. Immerse is a wrapper that adds graphical interactivity to Julia's plots. Currently, Immerse supports Gadfly. The toolbar at the top supports saving your figure to a file, zooming and panning, and lasso selection. Zooming and panning uses the defaults set by GtkUtilities. The left mouse button allows you to rubberband-select a zoom region. Use your mouse wheel or arrow-keys to pan or change the zoom level. Double-click, or press the 1:1... -
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Inviwo
Interactive Visualization Workshop
Inviwo is a modern, open-source visualization framework designed for interactive visual data analysis and scientific computing. Built in C++ with a modular, extensible architecture, Inviwo combines a visual editor (for creating data pipelines) with a powerful runtime engine that supports real-time rendering, interaction, and GPU-accelerated processing. It’s widely used in scientific domains for building and sharing visualizations of complex data such as medical imaging, simulations, and... -
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julia-vim
Vim support for Julia.
Vim support for Julia. This plug-in adds some functionality to substitute LaTeX code sequences (e.g. \alpha) with corresponding Unicode symbols (e.g. α). By default, these substitutions must be triggered explicitly by pressing the Tab key, as in the Julia command line (the REPL); however, an automatic, as-you-type mode can also be activated, and a method based on keymap is also available. This feature also works in command mode, e.g. when searching the files with the / or ? commands, but the... -
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ComplexHeatmap
Make Complex Heatmaps
ComplexHeatmap is an R/Bioconductor package by Zuguang Gu et al. designed to create highly flexible, complex, richly annotated heatmaps and related visualizations. It allows arranging multiple heatmaps, adding annotations, combining heatmaps, customizing colors, layouts, and integrating other plots. Often used in genomics/bioinformatics to show expression, methylation, etc., with sidebars, annotations, clustering, etc. Highly customizable layout: combining different heatmaps, arranging and... -
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MaRC (Map Reprojections and Conversions) is a C++ library and program designed to produce map projections of bodies thay may be represented as oblate spheroids from digital images (e.g. FITS images) or computed values (e.g. incidence and emission angles).
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DocOpt.jl
Command line arguments parser
DocOpt.jl is a port of docopt written in the Julia language. docopt generates a command-line arguments parser from human-readable usage patterns. The DocOpt module exports just one function, docopt, which takes multiple arguments but all of them except the first one are optional. -
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Plotly.jl
A Julia interface to the plot.ly plotting library and cloud services
A Julia interface to the plot.ly plotting library and cloud services. Plotting functions provided by this package are identical to PlotlyJS. Please consult its documentation. In fact, the package depends on PlotlyJS.jl and reexports all the methods. -
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TerminalMenus.jl
Simple interactive menus for the terminal (Now ships with Julia!)
This package has been merged into the Julia standard library. As such, you probably just want to using REPL.TerminalMenus and skip the Installation instructions. The RadioMenu allows the user to select one option from the list. The request function displays the interactive menu and returns the index of the selected choice. If a user presses 'q' or ctrl-c, request will return a -1. -
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...This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the wiki: http://sourceforge.net/p/adamajava/wiki/Home/
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HttpServer.jl
Basic, non-blocking HTTP server in Julia
This is a basic, non-blocking HTTP server in Julia. You can write a basic application using just this if you're happy dealing with values representing HTTP requests and responses directly. For a higher-level view, you could use Mux. If you'd like to use WebSockets as well, you'll need to grab WebSockets.jl. -
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Merlin.jl
Deep Learning for Julia
Merlin is a deep learning framework written in Julia. It aims to provide a fast, flexible and compact deep learning library for machine learning. Merlin is tested against Julia 1.0 on Linux, OS X, and Windows (x64). -
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Britecharts
Composable Charting Library based on reusable D3.js components
...All the components expose some common API methods like width, height, and margin. Additionally, each chart or component can expose specific methods you can find in the documentation. Britecharts components are distributed in UMD modules, each one exposing a D3.js component written with the Reusable API pattern. To use any of the Britecharts modules, you will need to require the chart in your JS file using AMD/CommonJS modules or adding a script tag with the src pointing to the file. -
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SBML2LaTeX
A documentation and report generator for systems biological models
SBML2LATEX is a tool to convert files in the System Biology Markup Language SBML) format into LATEX files. A convenient online version is available, which allows the user to directly generate report from SBML in form of PDF or TeX, which can be further processed to various file types including DVI, PS, EPS, GIF, JPG, or PNG. SBML2LATEX can also be downloaded and used locally in batch mode or interactively with its Graphical User Interface or several command line options. The purpose of... -
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Krisk
Statistical Interactive Visualization with pandas+Jupyter integration
Krisk brings Echarts to the Python Data Science Ecosystem, and helpful tools for high-level statistical interactive visualization.
