Showing 388 open source projects for "bcftools-windows"

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  • 1
    CSV

    CSV

    Utility library for working with CSV and other delimited files

    Welcome to CSV.jl! A pure-Julia package for handling delimited text data, be it comma-delimited (csv), tab-delimited (tsv), or otherwise. A fast, flexible delimited file reader/writer for Julia.
    Downloads: 17 This Week
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  • 2
    Rocket.jl

    Rocket.jl

    Functional reactive programming extensions library for Julia

    Rocket.jl is a Julia package for reactive programming using Observables, to make it easier to work with asynchronous data. Rocket.jl has been designed with a focus on performance and modularity.
    Downloads: 18 This Week
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  • 3
    Mixed-effects models in Julia

    Mixed-effects models in Julia

    A Julia package for fitting (statistical) mixed-effects models

    This package defines linear mixed models (LinearMixedModel) and generalized linear mixed models (GeneralizedLinearMixedModel). Users can use the abstraction for statistical model API to build, fit (fit/fit!), and query the fitted models. A mixed-effects model is a statistical model for a response variable as a function of one or more covariates. For a categorical covariate the coefficients associated with the levels of the covariate are sometimes called effects, as in "the effect of using...
    Downloads: 17 This Week
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  • 4
    ReachabilityAnalysis.jl

    ReachabilityAnalysis.jl

    Compute reachable states of dynamical systems

    Reachability analysis is concerned with computing rigorous approximations of the set of states reachable by a dynamical system. In the scope of this package are systems modeled by continuous or hybrid dynamical systems, where the dynamics change with discrete events. Systems are modeled by ordinary differential equations (ODEs) or semi-discrete partial differential equations (PDEs), with uncertain initial states, uncertain parameters or non-deterministic inputs.
    Downloads: 17 This Week
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  • 5
    PythonCall & JuliaCall

    PythonCall & JuliaCall

    Python and Julia in harmony

    Bringing Python® and Julia together in seamless harmony. Call Python code from Julia and Julia code from Python via a symmetric interface. Simple syntax, so the Python code looks like Python and the Julia code looks like Julia. Intuitive and flexible conversions between Julia and Python: anything can be converted, you are in control. Fast non-copying conversion of numeric arrays in either direction: modify Python arrays (e.g. bytes, array. array, numpy.ndarray) from Julia or Julia arrays...
    Downloads: 16 This Week
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  • 6
    Plots

    Plots

    Powerful convenience for Julia visualizations and data analysis

    Data visualization has a complicated history. Plotting software makes trade-offs between features and simplicity, speed and beauty, and a static and dynamic interface. Some packages make a display and never change it, while others make updates in real-time. Plots is a visualization interface and toolset. It sits above other backends, like GR, PythonPlot, PGFPlotsX, or Plotly, connecting commands with implementation. If one backend does not support your desired features or make the right...
    Downloads: 17 This Week
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  • 7
    BAT.jl

    BAT.jl

    A Bayesian Analysis Toolkit in Julia

    Welcome to BAT, a Bayesian analysis toolkit in Julia. BAT.jl offers a variety of posterior sampling, mode estimation and integration algorithms, supplemented by plotting recipes and I/O functionality. BAT.jl originated as a rewrite/redesign of BAT, the Bayesian Analysis Toolkit in C++. BAT.jl now offer a different set of functionality and a wider variety of algorithms than its C++ predecessor.
    Downloads: 15 This Week
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  • 8
    NNlib.jl

    NNlib.jl

    Neural Network primitives with multiple backends

    This package provides a library of functions useful for neural networks, such as softmax, sigmoid, batched multiplication, convolutions and pooling. Many of these are used by Flux.jl, which loads this package, but they may be used independently.
    Downloads: 13 This Week
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  • 9
    NeuralOperators.jl

    NeuralOperators.jl

    DeepONets, Neural Operators, Physics-Informed Neural Ops in Julia

    Neural operator is a novel deep learning architecture. It learns an operator, which is a mapping between infinite-dimensional function spaces. It can be used to resolve partial differential equations (PDE). Instead of solving by finite element method, a PDE problem can be resolved by training a neural network to learn an operator mapping from infinite-dimensional space (u, t) to infinite-dimensional space f(u, t). Neural operator learns a continuous function between two continuous function...
    Downloads: 17 This Week
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  • 10
    SumOfSquares.jl

    SumOfSquares.jl

    Sum of Squares Programming for Julia

    SumOfSquares.jl is a JuMP extension that, when used in conjunction with MultivariatePolynomial and PolyJuMP, implements a sum of squares reformulation for polynomial optimization.
    Downloads: 12 This Week
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  • 11
    Catalyst.jl

    Catalyst.jl

    Chemical reaction network and systems biology interface

    Catalyst.jl is a symbolic modeling package for analysis and high-performance simulation of chemical reaction networks. Catalyst defines symbolic ReactionSystems, which can be created programmatically or easily specified using Catalyst's domain-specific language (DSL). Leveraging ModelingToolkit and Symbolics.jl, Catalyst enables large-scale simulations through auto-vectorization and parallelism. Symbolic ReactionSystems can be used to generate ModelingToolkit-based models, allowing the easy...
    Downloads: 16 This Week
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  • 12
    StatsBase.jl

    StatsBase.jl

    Basic statistics for Julia

    StatsBase.jl is a Julia package that provides basic support for statistics. Particularly, it implements a variety of statistics-related functions, such as scalar statistics, high-order moment computation, counting, ranking, covariances, sampling, and empirical density estimation.
    Downloads: 12 This Week
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  • 13
    SymbolicRegression.jl

    SymbolicRegression.jl

    Distributed High-Performance Symbolic Regression in Julia

    SymbolicRegression.jl searches for symbolic expressions which optimize a particular objective.
    Downloads: 11 This Week
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  • 14
    VoronoiFVM.jl

    VoronoiFVM.jl

    Solution of nonlinear multiphysics partial differential equations

    Solver for coupled nonlinear partial differential equations (elliptic-parabolic conservation laws) based on the Voronoi finite volume method. It uses automatic differentiation via ForwardDiff.jl and DiffResults.jl to evaluate user functions along with their jacobians and calculate derivatives of solutions with respect to their parameters.
    Downloads: 12 This Week
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  • 15
    ReservoirComputing.jl

    ReservoirComputing.jl

    Reservoir computing utilities for scientific machine learning (SciML)

    ReservoirComputing.jl provides an efficient, modular and easy-to-use implementation of Reservoir Computing models such as Echo State Networks (ESNs). For information on using this package please refer to the stable documentation. Use the in-development documentation to take a look at not-yet-released features.
    Downloads: 12 This Week
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  • 16
    LanguageServer.jl

    LanguageServer.jl

    An implementation of the Microsoft Language Server Protocol

    This package implements the Microsoft Language Server Protocol for the Julia programming language. Text editors with a client for the Language Server Protocol are able to make use of the Julia Language Server for various code editing features.
    Downloads: 11 This Week
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  • 17
    AppleAccelerate.jl

    AppleAccelerate.jl

    Julia interface to the macOS Accelerate framework

    Julia interface to the macOS Accelerate framework. This provides a Julia interface to some of the macOS Accelerate frameworks. At the moment, this package provides access to Accelerate BLAS and LAPACK using the libblastrampoline framework, an interface to the array-oriented functions, which provide a vectorized form for many common mathematical functions. The performance is significantly better than using standard libm functions in some cases, though there does appear to be some reduced...
    Downloads: 12 This Week
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  • 18
    FrankWolfe.jl

    FrankWolfe.jl

    Julia implementation for various Frank-Wolfe and Conditional Gradient

    This package is a toolbox for Frank-Wolfe and conditional gradient algorithms. Frank-Wolfe algorithms were designed to solve optimization problems where f is a differentiable convex function and C is a convex and compact set. They are especially useful when we know how to optimize a linear function over C in an efficient way.
    Downloads: 10 This Week
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  • 19
    Tables.jl

    Tables.jl

    An interface for tables in Julia

    The Tables.jl package provides simple, yet powerful interface functions for working with all kinds of tabular data.
    Downloads: 9 This Week
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  • 20
    NonlinearSolve.jl

    NonlinearSolve.jl

    High-performance and differentiation-enabled nonlinear solvers

    Fast implementations of root-finding algorithms in Julia that satisfy the SciML common interface. For information on using the package, see the stable documentation. Use the in-development documentation for the version of the documentation that contains the unreleased features. NonlinearSolve.jl is a unified interface for the nonlinear solving packages of Julia. The package includes its own high-performance nonlinear solvers which include the ability to swap out to fast direct and iterative...
    Downloads: 12 This Week
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  • 21
    GPUCompiler.jl

    GPUCompiler.jl

    Reusable compiler infrastructure for Julia GPU backends

    Reusable compiler infrastructure for Julia GPU backends. This package offers reusable compiler infrastructure and tooling for implementing GPU compilers in Julia. It is not intended for end users! Instead, you should use one of the packages that builds on GPUCompiler.jl, such as CUDA.jl or AMDGPU.jl.
    Downloads: 9 This Week
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  • 22
    ImplicitDifferentiation.jl

    ImplicitDifferentiation.jl

    Automatic differentiation of implicit functions

    ImplicitDifferentiation.jl is a package for automatic differentiation of functions defined implicitly, i.e., forward mappings. Those for which automatic differentiation fails. Reasons can vary depending on your backend, but the most common include calls to external solvers, mutating operations or type restrictions. Those for which automatic differentiation is very slow. A common example is iterative procedures like fixed point equations or optimization algorithms.
    Downloads: 9 This Week
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  • 23
    CategoricalArrays.jl

    CategoricalArrays.jl

    Arrays for working with categorical data

    This package provides tools for working with categorical variables, both with unordered (nominal variables) and ordered categories (ordinal variables), optionally with missing values.
    Downloads: 8 This Week
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  • 24
    Optimization.jl

    Optimization.jl

    Mathematical Optimization in Julia

    Optimization.jl provides the easiest way to create an optimization problem and solve it. It enables rapid prototyping and experimentation with minimal syntax overhead by providing a uniform interface to >25 optimization libraries, hence 100+ optimization solvers encompassing almost all classes of optimization algorithms such as global, mixed-integer, non-convex, second-order local, constrained, etc. It allows you to choose an Automatic Differentiation (AD) backend by simply passing an...
    Downloads: 10 This Week
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  • 25
    KernelDensity.jl

    KernelDensity.jl

    Kernel density estimators for Julia

    Kernel density estimators for Julia.
    Downloads: 7 This Week
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