Search Results for "v-lab"
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Showing 34 open source projects for "v-lab"
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Clustering.jl
A Julia package for data clustering
Methods for data clustering and evaluation of clustering quality. -
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QUAST
Quality Assessment Tool for Genome Assemblies
QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. It is maintained by the Gurevich lab at HIPS (https://helmholtz-hips.de/en/hmsb). For the most up-to-date description, please visit http://quast.sf.net. Below are just some highlights. QUAST computes several well-known metrics, including contig accuracy, the number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and manual). ... -
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luscus
molecular editor and viewer
...The program is developed as a graphical interface for MOLCAS program package, however it's adaptive nature makes possible using luscus with other computational program packages and chemical formats. If you use this program, please cite: G. Kovačević, V. Veryazov, J. Cheminformatics, 7 (2015) 1-10; DOI: 10.1186/s13321-015-0060-z -
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NumeRe
Framework for numerical computations, data analysis and visualisation
Curve fitting | Data analysis | Plotting | Matrix operations | FFT | Extensible framework | Multiple file formats | Programmable | Open source | Free for everyone NumeRe: Framework for Numerical Computation is a numerical framework written for Microsoft Windows(R) and released under the GNU GPL v3 for solving and visualizing mathematical and physical problems numerically. Keep simple things simple: You want to plot a sine function? Just enter 'plot sin(x)'. You want to load some... -
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treeminder
a free mind mapping tool, to especially assist decision making
I've been trying to develop an idea of a project, but the wide range of possibilities with all their outcomes, cons and pros and whatnot got my mind overloaded. There was no way I could keep or process that much information with my bare mind. So, I've checked the mind mapping tools available in the market, both free and commercial ones, yet they were either clunky or overkilling for my needs. Thus, I've made my own thing, and decided to share it with everyone who might find it useful for... -
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Rawgraphs app
A web interface to create custom vector-based visualizations
...Microsoft Excel, Apple Numbers, OpenRefine) and vector graphics editors (e.g. Adobe Illustrator, Inkscape, Figma). The project, led and maintained by the DensityDesign Research Lab (Politecnico di Milano) was released publicly in 2013. -
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DataVoyager.jl
Julia wrapper for the Voyager data exploration tool
This package provides Julia integration for the Voyager data exploration tool. DataVoyager.jl can be used for data exploration. It can help you visualize and understand any data that is in a tabular format. -
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rayshade-mathematica
rayshade and POV for Mathematica Export + view
Beautifully Render* your Graphic3D and Shown or Manipulate right in the Front End (without Export to, ie 3DStudio Art Renderer, et al). For use with Mathematica 4.0 - 13.1. Makes file.ray or .pov that will look much like image in notebook except rendered. Works easily/automatically with many Graphics3D (and some Graphic) as well. However graphics in 13.1 is too big to comment on: many will work many not. Has many options to fix renders that aren't so auto. Now very portable... -
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OpticSim.jl
Optical Simulation software
OpticSim.jl is a Julia package for geometric optics (ray tracing) simulation and optimization of complex optical systems developed by the Microsoft Research Interactive Media Group and the Microsoft Hardware Architecture Incubation Team (HART). It is designed to allow optical engineers to create optical systems procedurally and then to simulate and optimize them. Unlike Zemax, Code V, or other interactive optical design systems OpticSim.jl has limited support for interactivity, primarily in the tools for visualizing optical systems. A large variety of surface types are supported, and these can be composed into complex 3D objects through the use of constructive solid geometry (CSG). A complete catalog of optical materials is provided through the complementary GlassCat submodule. ... -
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XISMuS
X-Ray Imaging Software for Multiple Samples
...The update works for any previous 2.x.x version. If upgrading from version v1.x.x, please download and install v2.0.0 first. IMPORTANT FIXES in respect to base v2.0.0 version: v.2.5.0 introduces the Differential Attenuation and Cube Viewer utilities, and migrates user database to *.json files v2.4.3 fixes a with K element in the fit-approx method v2.4.3 fixes and issue where saving plots with fit-approx or a auto-wizard could freeze the software v2.4.2 introduces Image Viewer to Mosaic v2.4.1 fixes an issue in merging H5 or EDF datasets with Mosaic Full changelog at https://linssab.github.io/history X-Ray Fluorescence Imaging Software for Multiple Samples is an open source software to manipulate and study macro-X-Ray Fluorescence (MA-XRF) datasets. ... -
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Hedgehog Lab
Run, compile and execute JavaScript for Scientific Computing
Hedgehog Lab is an open-source scientific computation tool in the browser. Before the development, Pleases make sure you are already installed and enabled the yarn. Once cloned, switch to the dev branch and navigate to the folder by typing cd hedgehog-lab and then running the provided commands. On each run the program compiles and it takes time. -
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Bridge.jl
A statistical toolbox for diffusion processes
Statistics and stochastic calculus for Markov processes in continuous time, include univariate and multivariate stochastic processes such as stochastic differential equations or diffusions (SDE's) or Levy processes. -
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julia-vim
Vim support for Julia.
Vim support for Julia. This plug-in adds some functionality to substitute LaTeX code sequences (e.g. \alpha) with corresponding Unicode symbols (e.g. α). By default, these substitutions must be triggered explicitly by pressing the Tab key, as in the Julia command line (the REPL); however, an automatic, as-you-type mode can also be activated, and a method based on keymap is also available. This feature also works in command mode, e.g. when searching the files with the / or ? commands, but the... -
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Please see https://github.com/BRIO-lab/Joint-Track-Machine-Learning for the latest version of the JointTrack/JointTrack Auto lineage.
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...Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the wiki: http://sourceforge.net/p/adamajava/wiki/Home/
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Kinetic Model Builder
GUI for building, simulating and optimizing kinetic models.
...For ion channels, this is useful for simulating dose-response or current-voltage curves both with and without a secondary stimulus (e.g. some drug). A series of video tutorials are available at https://www.youtube.com/watch?v=7I2XPkdOvCg&list=PL-J_lULjiFsCPL2pkz8_tFe_aJ4Fc8a8k&index=1. -
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GeOxygene aims at providing an open framework which implements OGC/ISO specifications for the development and deployment of geographic (GIS) applications. It is a open source contribution of the COGIT lab. at the IGN (the French National Mapping Agency).
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New CTruck3D Rally
Free-roaming 3D racing game featuring advanced terrain rendering
...KEYS: mouse: primary camera control arrows: drive vehicle ; SHIFT: turbo ; TAB: change car. o: change camera ; 1,2: zoom-in/out ; 3,4 : horizontal and vertical camera placement (internal view) u: respawn car c,v,f,r :secondary camera control. 8,9:plane drv -
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GoIFISH
for the semi-automated analysis of IFISH images
...Source code is also available for download. To cite this software: "GoIFISH: A system for the quantification of single cell heterogeneity from IFISH images" Trinh A, Rye IH, Almendro V, Helland A, Russness HG, Markowetz F May 2014 -
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WebChemViewer
A simple program for sharing molecular structures with associated data
...The output can also be easily incorporated into existing web pages. WebChem Viewer is released under the FreeBSD license. It was created by Jacob Durrant, a post-doc in the lab of Rommie E. Amaro. -
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Predyketide is a stand-alone desktop application which provides a way to observe the resulting structure per elongation of the polyketide chain, and predict the most possible natural product structure. This tool can be helpful in the discovery of new drugs requiring lesser time and effort. The project uses the cdk v.1.5 and cdk-jchempaint-26.
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JLab is a visualization System for the c't Lab. The various modules (IO-Signaling, Frequency, Power Supply) can be viewed and controlled via a Java Swing Interface
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KinectCAD
Gesture based movement with CATIA
...Until now there is a handbook and several other documents to understand KinectCAD which are not translated to english but in the near future I will translate them. http://www.youtube.com/watch?v=A3ZYCyCt75g If there are questions or problems mail me. -
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This is my implementation of Langton's Ant (a popular turing machine, see http://en.wikipedia.org/wiki/Langton%27s_ant for more information) using C#. Supports multiple ants and threading. Video: http://www.youtube.com/watch?v=Vu9C_1DH31k
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