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JDF.jl
Julia DataFrames serialization format
JDF is a DataFrames serialization format with the following goals, fast save and load times, compressed storage on disk, enabled disk-based data manipulation (not yet achieved), and support for machine learning workloads, e.g. mini-batch, sampling (not yet achieved). JDF stores a DataFrame in a folder with each column stored as a separate file. There is also a metadata.jls file that stores metadata about the original DataFrame. Collectively, the column files, the metadata file, and the... -
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Conda.jl
https://github.com/JuliaPy/Conda.jl
This package allows one to use conda as a cross-platform binary provider for Julia for other Julia packages, especially to install binaries that have complicated dependencies like Python. conda is a package manager that started as the binary package manager for the Anaconda Python distribution, but it also provides arbitrary packages. Instead of the full Anaconda distribution, Conda.jl uses the miniconda Python environment, which only includes conda and its dependencies. -
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Distributions.jl
A Julia package for probability distributions and associated functions
A Julia package for probability distributions and associated functions. -
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Bayesian Statistics
This repository holds slides and code for a full Bayesian statistics
This repository holds slides and code for a full Bayesian statistics graduate course. Bayesian statistics is an approach to inferential statistics based on Bayes' theorem, where available knowledge about parameters in a statistical model is updated with the information in observed data. The background knowledge is expressed as a prior distribution and combined with observational data in the form of a likelihood function to determine the posterior distribution. The posterior can also be used... -
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Lasso.jl
Lasso/Elastic Net linear and generalized linear models
Lasso.jl is a pure Julia implementation of the glmnet coordinate descent algorithm for fitting linear and generalized linear Lasso and Elastic Net models. -
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WordCloud.jl
Word cloud generator in julia
Word cloud (tag cloud or wordle) is a novelty visual representation of text data. The importance of each word is shown with its font size, position, or color. WordCloud.jl is the perfect tool for generating word clouds, offering several advantages. You have control over every aspect of generating a word cloud. You can customize the shape, color, angle, position, distribution, density, and spacing to align with your preferences and artistic style. This visualization solution guarantees... -
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Bayesian Optimization
Python implementation of global optimization with gaussian processes
This is a constrained global optimization package built upon bayesian inference and gaussian process, that attempts to find the maximum value of an unknown function in as few iterations as possible. This technique is particularly suited for optimization of high cost functions, situations where the balance between exploration and exploitation is important. More detailed information, other advanced features, and tips on usage/implementation can be found in the examples folder. Follow the basic... -
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ProbNumDiffEq.jl
Probabilistic Numerical Differential Equation solvers via Bayesian fil
ProbNumDiffEq.jl provides probabilistic numerical ODE solvers to the DifferentialEquations.jl ecosystem. The implemented ODE filters solve differential equations via Bayesian filtering and smoothing. The filters compute not just a single point estimate of the true solution, but a posterior distribution that contains an estimate of its numerical approximation error. -
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The PyPlot module for Julia
Plotting for Julia based on matplotlib.pyplot
This module provides a Julia interface to the Matplotlib plotting library from Python, and specifically to the matplotlib.pyplot module. PyPlot uses the Julia PyCall package to call Matplotlib directly from Julia with little or no overhead (arrays are passed without making a copy). (See also PythonPlot.jl for a version of PyPlot.jl using the alternative PythonCall.jl package.) This package takes advantage of Julia's multimedia I/O API to display plots in any Julia graphical backend,... -
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Mixed-effects models in Julia
A Julia package for fitting (statistical) mixed-effects models
This package defines linear mixed models (LinearMixedModel) and generalized linear mixed models (GeneralizedLinearMixedModel). Users can use the abstraction for statistical model API to build, fit (fit/fit!), and query the fitted models. A mixed-effects model is a statistical model for a response variable as a function of one or more covariates. For a categorical covariate the coefficients associated with the levels of the covariate are sometimes called effects, as in "the effect of using... -
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Semiotic
A data visualization framework combining React & D3
Semiotic is a data visualization framework combining React & D3. It provides three types of frames XYFrame, OrdinalFrame, NetworkFrame, to deploy a wide variety of charts. XY data i.e. line charts and scatterplots. Categorical data i.e. bar charts, violin plots, parallel coordinates. Topological and network data i.e. flow diagrams, network visualization, and hierarchical views. A guide for creating a line chart, timeseries, difference line, and line percents using XYFrame along with hover... -
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Go Recipes
Collection of handy tools for Go projects
Visualize the distribution of code coverage in your project. This helps to identify code areas with high and low coverage. Useful when you have a large project with lots of files and packages. This 2D image-hash of your project should be more representative than a single number. For each module, the node representing the greatest version (i.e., the version chosen by Go's minimal version selection algorithm) is colored green. Other nodes, which aren't in the final build list, are colored grey... -
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awesome-single-cell
Community-curated list of software packages and data resources
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. List of software packages (and the people developing these methods) for single-cell data analysis, including RNA-seq, ATAC-seq, etc. Rapid, accurate and memory-frugal preprocessing of single-cell and single-nucleus RNA-seq data. Find bimodal, unimodal, and multimodal features in your data. Ascend is an R package comprised of fast, streamlined analysis functions optimized to... -
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ProbabilisticCircuits.jl
Probabilistic Circuits from the Juice library
This module provides a Julia implementation of Probabilistic Circuits (PCs), tools to learn structure and parameters of PCs from data, and tools to do tractable exact inference with them. Probabilistic Circuits provides a unifying framework for several family of tractable probabilistic models. PCs are represented as computational graphs that define a joint probability distribution as recursive mixtures (sum units) and factorizations (product units) of simpler distributions (input units).... -
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LIBSVM.jl
LIBSVM bindings for Julia
LIBSVM bindings for Julia. This is a Julia interface for LIBSVM and for the linear SVM model provided by LIBLINEAR. Supports all LIBSVM models: classification C-SVC, nu-SVC, regression: epsilon-SVR, nu-SVR and distribution estimation: one-class SVM. Model objects are represented by Julia-type SVM which gives you easy access to model features and can be saved e.g. as JLD file. -
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Eulumdat_3D - QLumEdit2
show and edit eulumdat files
Eulumdat_3D the better Eulumdat viewer and editor. You can view ldt files as 3D ,compare two luminaires, print a simple datasheet. From given light distribution you can create different ldt files depending on light flux and CCT also as app under https://play.google.com/store/apps/details?id=com.riloc.eulumdat -
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Bayesian Julia
Bayesian Statistics using Julia and Turing
Bayesian statistics is an approach to inferential statistics based on Bayes' theorem, where available knowledge about parameters in a statistical model is updated with the information in observed data. The background knowledge is expressed as a prior distribution and combined with observational data in the form of a likelihood function to determine the posterior distribution. The posterior can also be used for making predictions about future events. Bayesian statistics is a departure from... -
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missingno
Missing data visualization module for Python
Messy datasets? Missing values? missingno provides a small toolset of flexible and easy-to-use missing data visualizations and utilities that allows you to get a quick visual summary of the completeness (or lack thereof) of your dataset. Just pip install missingno to get started. This quickstart uses a sample of the NYPD Motor Vehicle Collisions Dataset dataset. The msno.matrix nullity matrix is a data-dense display which lets you quickly visually pick out patterns in data completion. At a... -
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HMMBase.jl
Hidden Markov Models for Julia
HMMBase is not maintained anymore. It will keep being available as a Julia package but we encourage existing and new users to migrate to HiddenMarkovModels.jl which offers a similar interface. For more information see HiddenMarkovModels.jl: when did HMMs get so fast?. HMMBase provides a lightweight and efficient abstraction for hidden Markov models in Julia. Most HMMs libraries only support discrete (e.g. categorical) or Normal distributions. In contrast HMMBase builds upon Distributions.jl... -
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Facets
Visualizations for machine learning datasets
The power of machine learning comes from its ability to learn patterns from large amounts of data. Understanding your data is critical to building a powerful machine learning system. Facets contains two robust visualizations to aid in understanding and analyzing machine learning datasets. Get a sense of the shape of each feature of your dataset using Facets Overview, or explore individual observations using Facets Dive. Explore Facets Overview and Facets Dive on the UCI Census Income... -
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ComplexHeatmap
Make Complex Heatmaps
ComplexHeatmap is an R/Bioconductor package by Zuguang Gu et al. designed to create highly flexible, complex, richly annotated heatmaps and related visualizations. It allows arranging multiple heatmaps, adding annotations, combining heatmaps, customizing colors, layouts, and integrating other plots. Often used in genomics/bioinformatics to show expression, methylation, etc., with sidebars, annotations, clustering, etc. Highly customizable layout: combining different heatmaps, arranging and... -
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Active Intelligence Server
Reporting, Dashboarding, Analytic, Self-service BI, Ad-hoc reporting
Active Intelligence Server 2 (AIS) is a data visualization tool and fully featured reporting server which enable users from open source community to host any reports created using BIRT, Jasper and Pentaho community edition allowing organization to leverage open source technologies and enable them to use AIS as a reporting server to deploy their existing and new reports seamlessly onto AIS for secure sharing the information in different file formats and schedule to make system automation and... -
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ImagingAnalysis
Direct tissue-level image quantification package for Mathematica
ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0. Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11. -
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PaPCo is modular IDL software for the analysis, distribution and display of science data products. Primarily used by the space science community but in principle suited for any time ordered data products.
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iSBatch
Hyearchical Data Processing Plugin for ImageJ
iSBatch is a Java-based plugin for ImageJ (version 1.49d) or its distribution Fiji. iSBatch is designed for quick evaluation of analysis pipelines and visual exploration of datasets. It is distributed under an open open-source license (GNU General Public License, version 3). The plugin handles the data in a hierarchical fashion based on a source folder containing all data and little guidance provided by the user. The software is designed for rapid exploration of large datasets and...
