Open Source Data Visualization Software - Page 31

Biorec is an open source control software written for Windows operating systems to provide data logging, process monitoring and control for pilot and laboratory scale BioFlo® series (Eppendorf AG, Hamburg/Germany) fermentors/bioreactors. The supported models are BioFlo® III and BioFlo® 3000 (other models have not been tested in action). Biorec supports process automation through a user programming environment that allows controlling pumps, temperature or agitation by mathematical equations. Link to instructions: http://www.qitvision.com/wp-content/uploads/2016/01/Biorec-user-guide.pdf

Burrow-owl is a software package for visualizing multidimensional nuclear magnetic resonance (NMR) spectra, with an emphasis on spectra used in macromolecular structure determination.

DSAquire allows you to download and plot trace data from a Thurlby DSA524 digital storage adaptor (it's a 25 year old instrument, but better late than never, eh?). The data is downloaded via an RS232 serial link using a null modem cable. You can export the plot as an image or export the data in real-world units as a csv file. This software runs under Linux and also under Windows XP and later using Cygwin. Pre-compiled binaries are supplied, as are full sources under the GPL. The interface of provided via FLTK. Also hosted here are the service and operators' manuals for this instrument, as well as dumps of the firmware from the EPROM. Many thanks to those who have preserved these for posterity (the 2.79 and 2.86 firmware dumps where generated by me - the rest has been collected from around the 'net).

GLOBE_3D: GL Object Based Engine for 3D. GLOBE_3D is a free, open-source, real-time 3D Engine written in Ada, based on OpenGL. Up-to-date GL bindings - portal rendering - binary space partition - object I/O - tools for importing - and more... More information on... http://globe3d.sf.net Alire crate: https://alire.ada.dev/crates/globe_3d Mirror: https://github.com/zertovitch/globe-3d/

GWT Highcharts is a freely available open source library that provides an elegant and feature complete approach for including Highcharts and Highstock visualizations within a GWT application using pure Java code. Note: the source code for this project is now being maintained on GitHub here: https://github.com/squinn/gwt-highcharts

R-package to perform analysis of landmark based geometric morphometrics. Installation instructions: https://github.com/zarquon42b/Morpho/blob/master/README.md

NOVA is a program designed to analysis complexome profiling data (Heide et al., 2012). A graphical user interface (GUI) provides various visualization tools, such as heat maps and 2D plots. Several hierarchical clustering algorithms (e.g., single linkage, average linkage, Wards linkage), different distance measures (e.g., Euclidean distance, Manhattan distance, Pearson distance), and various normalization techniques are implemented. Many additional functions like zooming, searching for proteins, image export, and automatic file format recognition support intuitive handling for biologists. Giese, et al. NOVA: a software to analyze complexome profiling data. Bioinformatics, 2015, 31(3): 440-441

OpenXRD is a program for the analysis of X-ray diffraction data.It will comprise scan treatment (background substraction, peak hunting) as well as mineral identification.OpenXRD will read almost any available data format.

Overhead Imagery Research Data Set (OIRDS) - an annotated data library & tools to aid in the development of computer vision algorithms

PlotMM is an extension to GTKmm-2.0 providing a 2D data plotting widget.

RLPlot is a scientific plotting program to produce high quality graphs from data. It is a cross platform development written in C/C++ and may be compiled under Windows32 or Linux. RLPlot for Linux uses Trolltech's Qt.

Viewstl is an open source way to view Stereo Lithography Files as shaded on-screen images. Ascii STL files and dynamic rotation, scaling, and panning are currently supported. Written in C using OpenGL, GLU and GLUT.

Efficiently create compact, highly customizable tree layouts - Based on Walker's algorithm with enhancements suggested by Buchheim, Jünger, and Leipert the software builds tree layouts in linear time. I.e. even trees with many nodes are built fast. Downloads are available at https://sourceforge.net/projects/treelayout/files/. For detailed documentation look at the TreeLayout web site http://treelayout.sourceforge.net/. Development for TreeLayout has moved to https://github.com/abego/treelayout/.

Tunelator processes tunnel profile data for surveying work. It provides a powerfull grid editor, 3D preview, export to Prowin, Ispol, MDT and DXF (2D and 3D views with convenient layering).

UDAV is program for data arrays visualization based on MathGL library. It support wide spectrum of graphics, simple script language and visual data handling and editing.

V3D-Viewer is a Dicom and "Philips V3D 3DRA" Medical Volume Viewer based on .Net and the VTK library. With marching cubes, 3d planes and (3D texture) volume rendering, including histogram transparency and intensity curve selection tool.

It provides a graphical animated representation of a network simulation run (e.g. for ns-2). Further, common metrics are calculated and displayed. The tool is written in Java and supplies 2 frontends (applet and stand-alone application).

Windows ploting (wplot) Software wplot is a quick and easy to use Windows GUI software program for quickly creating and analyzing data plots. Create plots with millions of data points in seconds. Once the data is plotted you can easily use the many tools to explore your plot in great detail by zooming in/out, scrolling your plot and much more. Mutiple objects (data files/sets) can be plotted and overlaid. Objects can be individually hidden/viewed as the plot is studied. wplot does NOT generate data. wplot reads data points from file(s) and generates varied plots based on that data. A single Windows executable. Simple installation. Just download executable file and run. wplot is 100% FREE to use. No restrictions of any kind.

ATTENTION: Cumulative update 2.5.0 has been released!! The update works for any previous 2.x.x version. If upgrading from version v1.x.x, please download and install v2.0.0 first. IMPORTANT FIXES in respect to base v2.0.0 version: v.2.5.0 introduces the Differential Attenuation and Cube Viewer utilities, and migrates user database to *.json files v2.4.3 fixes a with K element in the fit-approx method v2.4.3 fixes and issue where saving plots with fit-approx or a auto-wizard could freeze the software v2.4.2 introduces Image Viewer to Mosaic v2.4.1 fixes an issue in merging H5 or EDF datasets with Mosaic Full changelog at https://linssab.github.io/history X-Ray Fluorescence Imaging Software for Multiple Samples is an open source software to manipulate and study macro-X-Ray Fluorescence (MA-XRF) datasets. XISMuS also works as a sample management tool, where you can easily change between datasets (samples) and compare, cross-interact and normalize them.

The new XVR Developer Studio is based on Eclipse. It allows to create and manage XVR projects, to author s3d and glsl code, to compile, debug and execute scripts in an HTML page. Currently only for Windows user. It needs an installed JRE >= 1.6

A package of programs for performing extended Hueckel calculations on molecules and solids and visualizing the results. Visualization functionality for some quantum packages (ADF and LMTO) is also provided.

A Matlab toolbox for geostatistical modelling, prediction and simulation. It contains native matlab algorithms, and interfaces to SGeMS, GSTAT and VISIM.

nPlot (alias nanoplot) aims to be a minimalistic, easy-to-use data analysis application.

xcruiser aims to provide 3D VR-like interface to UN*X filesystem. It displays directories as galaxies, files as planets (of various properties depending on its attributes) and symlinks as wormholes. You can fly through cyberspace created from these.

Cuttlefish aims to be a highly extensible visualization and analysis platform for all kinds of network data. IMPORTANT: The Cuttlefish project has been migrated to github: https://github.com/dev-cuttlefish/cuttlefish