Search Results for "data structures" - Page 3
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Showing 84 open source projects for "data structures"
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WebChemViewer
A simple program for sharing molecular structures with associated data
Sharing lists of molecular structures with associated chemical properties is a common task in computer-aided drug design and medicinal chemistry. WebChem Viewer is a simple, free, open-source program that generates HTML-formatted output that can be viewed in any modern web browser, on any operating system (including mobile), without requiring the installation of additional software. The output can also be easily incorporated into existing web pages. WebChem Viewer is released under the... -
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OpenCMISS-Zinc
A Library for Interactive Modelling and Visualisation
...Models are represented in Zinc as mathematical fields defined over domains, including finite elements with support for high-order basis functions, complex parameter mappings and time variation, and image-based fields. Further fields can be defined by mathematical expressions and algorithms on existing fields, including image processing filters. Zinc model data structures are dynamic, supporting interactive applications which programmatically create, destroy and modify parts of models. -
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CAPLET
GDS visualization and parallelized capacitance extraction
Project CAPLET is a capacitance extraction toolkit that extract capacitance at field-solver accuracy. CAPLET can directly handle GDS2 layout files into capacitance matrices in both GUI and command line interfaces. The internal extraction algorithm is specialized for VLSI interconnect structures but not exclusively, as long as the structure is of Manhattan geometry and embedded in a uniform dielectric material. -
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ViNSS View
Vienna Notation Secondary Structure Viewer
ViNSS View is a highly flexible tool for drawing RNA secondary structures. Secondary structures can be visualized as classical secondary structure plot, circle plot, linear plot or mountain plot. ViNSS View allows manual editing and several drawing styles, as well as a fully automated conjugate gradients minimization approach to draw more complex structures without user interaction. In addition, ViNSS View allows you to incorporate non-canonical base pairs into your drawing. -
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imDEV
Tools for multivariate data visualization, exploration and analysis.
You may also like some newer work: http://createdatasol.com/ Project imDEV is an application of RExcel, which seamlessly integrates Excel and R for tasks focused on multivariate data visualization, exploration, and analysis. Interactive modules for dimensional reduction (imPCA), prediction (imPLS), feature selection, analysis of correlation (imCorrelations) and generation of networked structures (imGraph) provide an integrated environment for systems level analysis of multivariate data. -
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Analysis
Application to creating charts.
The goal of project is delivering useful and simple tools to creating charts. Functionality is provided by modules/plugins (OSGi technology). It allows you to create your plugins or customize Analysis application (by changing installed plugins in application). The Application, thanks to JAVA technology, is portable on the most operating system. In Files page you can find the application and also patches to its. -
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Gavrog stands for "Generation, Analysis and Visualization of Reticular Ornaments using Gavrog". It is a Java library together with a suite of interactive applications for the study of periodic net-like structures in space and their applications.
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pyFormex is a program for generating, transforming and manipulating large geometrical models of 3D structures by sequences of mathematical operations.
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Free Organic Chemistry Analysis and Visualisation Tool; Chemical formula editor, calculation of threedimensional molecular structures, high-quality realtime rendering, ...
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Graph visualization using hyperbolic geometry (hyperbolic trees, but also general graphs). Applications cover web site structures, topic maps, organisational charts and wikis.
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The Molwind project aims at developing Open Source software to visualize relationships among molecular entities such as chemical structures on the basis of NASA WorldWind. Different levels of complexity get visible by zooming in areas of interest.
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WebBabel is a python web application using OpenBabel to convert files from one format to another. It runs under Windows, Mac or Linux on your desktop, workstation or laptop. It uses the Jmol (or Marvin) viewer to show the structures being converted.
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Book-A-Lyze is an open source web application for analysis and visualization of social structures at Facebook. The project is part of the study course “Media Management and Production” at the University of Applied Sciences, Kaiserslautern.
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A simple C#-based educational DSP-environment that allows simulation of signal processing applications with visual feedback. It features runtime editable structures like Filter, FFT/IFFT, Sampler. Parameter can be interactively changed during simulati
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Developed in Java programming language, this software lets its users view and manipulate hierarchical data structures represented as a hyperbolic trees.
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This project was inspired existing cheminformatics APIs such as the CDK, Marvin, and Frowns. The goal of the project is to produce a full featured cheminfo api for the .Net framework. Early stage dev will focus on data structures and classes for file io.
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GrALoG is a tool for editing and visualising graph-like-structures and the results of algorithms running on them. Through it's plugins GrALoG is hugely extendable, i.e. plugin-developers can define their own graph-like structures and algorithms.
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UDA stands for Universal Descriptive Algebra. It consists of a Java package handling universal algebras and relational structures as description systems.
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GUESS, or the Graph Exploration System, is a system and language for visualizing and manipulating graph structures and creating new visualization applications.
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LSystemBuilder is a program for editing and visualizing L-systems. LSystemBuilder makes it easy to explore fractals, FASS-curves and complex branching structures. Naturally LSystemBuilder comes packed with loads of predefined L-systems.
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The MatrixBrowser project presents a new approach for visualizing and exploring large networked information structures which may represent, for instance, linked information resources or metadata structures such as ontologies.
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DSIllustrator is a light-weight editor for making illustrations of data structures. It is used to make graphics of instances of basic data structure (trees, graphs, lists, stacks, etc) in very short time, to be used in lecture slides and typed homeworks.
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vinex (virtual network explorer) reduces the complexity of social networks by visualizing their structures. Based on data collected by a webcrawler from virtual communities, vinex offers the possibility to explore relationships between community members.
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The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads, tracker, and source code repository can be found on https://jchempaint.github.io
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cy.prus is a cross platform simulation environment for medical cybernetics and systems biology. Its purpose is to provide both a facility for simulating life and a GUI for easily constructing biological information processing structures based on XML.
