Search Results for "bcftools-windows" - Page 3
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Showing 2607 open source projects for "bcftools-windows"
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HiGHS.jl
Julia wrapper for the HiGHS solver
HiGHS.jl is a wrapper for the HiGHS solver. -
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NCDatasets.jl
Load and create NetCDF files in Julia
NCDatasets allows one to read and create netCDF files. NetCDF data set and attribute list behave like Julia dictionaries and variables like Julia arrays. This package implements the CommonDataModel.jl interface, which means that the datasets can be accessed in the same way as GRIB files opened with GRIBDatasets.jl. -
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Catalyst.jl
Chemical reaction network and systems biology interface
Catalyst.jl is a symbolic modeling package for analysis and high-performance simulation of chemical reaction networks. Catalyst defines symbolic ReactionSystems, which can be created programmatically or easily specified using Catalyst's domain-specific language (DSL). Leveraging ModelingToolkit and Symbolics.jl, Catalyst enables large-scale simulations through auto-vectorization and parallelism. Symbolic ReactionSystems can be used to generate ModelingToolkit-based models, allowing the easy... -
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BAT.jl
A Bayesian Analysis Toolkit in Julia
Welcome to BAT, a Bayesian analysis toolkit in Julia. BAT.jl offers a variety of posterior sampling, mode estimation and integration algorithms, supplemented by plotting recipes and I/O functionality. BAT.jl originated as a rewrite/redesign of BAT, the Bayesian Analysis Toolkit in C++. BAT.jl now offer a different set of functionality and a wider variety of algorithms than its C++ predecessor. -
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Manopt.jl
Optimization on Manifolds in Julia
Optimization Algorithm on Riemannian Manifolds. A framework to implement arbitrary optimization algorithms on Riemannian Manifolds. Library of optimization algorithms on Riemannian manifolds. Easy-to-use interface for (debug) output and recording values during an algorithm run. Several tools to investigate the algorithms, gradients, and optimality criteria. -
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FossFLOW
Make beautiful isometric infrastructure diagrams
FossFLOW is an open-source Progressive Web App for creating visually rich isometric infrastructure and network diagrams directly in the browser. Built with React and the Isoflow library, the application provides a specialized environment for producing 2.5D technical diagrams that are especially useful for DevOps and architecture documentation. The project is structured as a monorepo containing both a reusable React component library and the full web application wrapper. Because it runs fully... -
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PairPlots.jl
Beautiful and flexible vizualizations of high dimensional data
Beautiful and flexible visualizations of high-dimensional data. This package produces pair plots, otherwise known as corner plots or scatter plot matrices: grids of 1D and 2D histograms that allow you to visualize high-dimensional data. Pair plots are an excellent way to visualize the results of MCMC simulations, but are also a useful way to visualize correlations in general data tables. The default styles of this package roughly reproduce the output of the Python library corner.py for a... -
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PETSc.jl
Julia wrappers for the PETSc library
This package provides a low level interface for PETSc and allows combining julia features (such as automatic differentiation) with the PETSc infrastructure and nonlinear solvers. -
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Lasso.jl
Lasso/Elastic Net linear and generalized linear models
Lasso.jl is a pure Julia implementation of the glmnet coordinate descent algorithm for fitting linear and generalized linear Lasso and Elastic Net models. -
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ForwardDiff.jl
Forward Mode Automatic Differentiation for Julia
ForwardDiff implements methods to take derivatives, gradients, Jacobians, Hessians, and higher-order derivatives of native Julia functions (or any callable object, really) using forward mode automatic differentiation (AD). While performance can vary depending on the functions you evaluate, the algorithms implemented by ForwardDiff generally outperform non-AD algorithms (such as finite-differencing) in both speed and accuracy. Functions like f which map a vector to a scalar are the best case... -
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Parsers.jl
fast parsing machinery for basic types in Julia
A collection of type parsers and utilities for Julia. Installation: at the Julia REPL, import Pkg; Pkg.add("Parsers") Parsers is maintained collectively by the JuliaData collaborators. Responsiveness to pull requests and issues can vary, depending on the availability of key collaborators. -
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FinEtools.jl
Finite Element tools in Julia
FinEtools is a package for basic operations on finite element meshes: Construction, modification, selection, and evaluation of quantities defined on a mesh. Utilities are provided for maintaining mesh-based data (fields), for defining normals and loads, for working with physical units and coordinate systems, and for integrating over finite element meshes. -
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ResumableFunctions.jl
C# style generators a.k.a. semi-coroutines for Julia
C# has a convenient way to create iterators using the yield return statement. The package ResumableFunctions provides the same functionality for the Julia language by introducing the @resumable and the @yield macros. These macros can be used to replace the Task switching functions produce and consume which were deprecated in Julia v0.6. Channels are the preferred way for inter-task communication in Julia v0.6+, but their performance is subpar for iterator applications. -
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NNlib.jl
Neural Network primitives with multiple backends
This package provides a library of functions useful for neural networks, such as softmax, sigmoid, batched multiplication, convolutions and pooling. Many of these are used by Flux.jl, which loads this package, but they may be used independently. -
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DFTK.jl
Density-functional toolkit
The density-functional toolkit, DFTK for short, is a collection of Julia routines for experimentation with plane-wave density-functional theory (DFT). The unique feature of this code is its emphasis on simplicity and flexibility with the goal of facilitating algorithmic and numerical developments as well as interdisciplinary collaboration in solid-state research. -
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PlutoUI.jl
A tiny package to make html"input" a bit more Julian
A tiny package to make HTML "input" a bit more Julian. Use it with the @bind macro in Pluto. -
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UnROOT.jl
Native Julia I/O package to work with CERN ROOT files objects
UnROOT.jl is a reader for the CERN ROOT file format written entirely in Julia, without any dependence on ROOT or Python. -
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Finch.jl
Sparse tensors in Julia and more
Finch is a cutting-edge Julia-to-Julia compiler specially designed for optimizing loop nests over sparse or structured multidimensional arrays. Finch empowers users to write conventional for loops which are transformed behind-the-scenes into fast sparse code. -
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LineSearches.jl
Line search methods for optimization and root-finding
Line search methods for optimization and root-finding. This package provides an interface to line search algorithms implemented in Julia. The code was originally written as part of Optim, but has now been separated out to its own package. -
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EvoTrees.jl
Boosted trees in Julia
A Julia implementation of boosted trees with CPU and GPU support. Efficient histogram-based algorithms with support for multiple loss functions, including various regressions, multi-classification and Gaussian max likelihood. -
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GMT.jl
Generic Mapping Tools Library Wrapper for Julia
The Generic Mapping Tools, GMT, is an open source collection of tools for manipulating geographic and Cartesian data sets (including filtering, trend fitting, gridding, projecting, etc.) and producing PostScript illustrations ranging from simple x–y plots via contour maps to artificially illuminated surfaces and 3D perspective views. This link will take you to an impressive collection of figures made with GMT. The GMT Julia wrapper was designed to work in a way the close as possible to the... -
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QuasiMonteCarlo.jl
Lightweight and easy generation of quasi-Monte Carlo sequences
Lightweight and easy generation of quasi-Monte Carlo sequences with a ton of different methods on one API for easy parameter exploration in scientific machine learning (SciML). This is a lightweight package for generating Quasi-Monte Carlo (QMC) samples using various different methods. -
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PowerSimulationsDynamics.jl
Julia package to run Dynamic Power System simulations
PowerSimulationsDynamics.jl is a Julia package for power system modeling and simulation of Power Systems dynamics. -
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SciMLBase.jl
The Base interface of the SciML ecosystem
SciMLBase.jl is the core interface definition of the SciML ecosystem. It is a low-dependency library made to be depended on by the downstream libraries to supply the common interface and allow for the interexchange of mathematical problems. The SciML common interface ties together the numerical solvers of the Julia package ecosystem into a single unified interface. It is designed for maximal efficiency and parallelism, while incorporating essential features for large-scale scientific machine... -
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DiffOpt.jl
Differentiating convex optimization programs w.r.t. program parameters
DiffOpt.jl is a package for differentiating convex optimization programs (JuMP.jl or MathOptInterface.jl models) with respect to program parameters. Note that this package does not contain any solver. This package has two major backends, available via the reverse_differentiate! and forward_differentiate! methods, to differentiate models (quadratic or conic) with optimal solutions. Differentiable optimization is a promising field of convex optimization and has many potential applications in...
