Open Source Data Visualization Software - Page 16
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Data Visualization Software
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HDF5.jl
Save and load data in the HDF5 file format from Julia
HDF5 stands for Hierarchical Data Format v5 and is closely modeled on file systems. In HDF5, a "group" is analogous to a directory, a "dataset" is like a file. HDF5 also uses "attributes" to associate metadata with a particular group or dataset. HDF5 uses ASCII names for these different objects, and objects can be accessed by Unix-like pathnames, e.g., "/sample1/tempsensor/firsttrial" for a top-level group "sample1", a subgroup "tempsensor", and a dataset "firsttrial". For simple types (scalars, strings, and arrays), HDF5 provides sufficient metadata to know how each item is to be interpreted. For example, HDF5 encodes that a given block of bytes is to be interpreted as an array of Int64, and represents them in a way that is compatible across different computing architectures. However, to preserve Julia objects, one generally needs additional type information to be supplied, which is easy to provide using attributes. -
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HMMBase.jl
Hidden Markov Models for Julia
HMMBase is not maintained anymore. It will keep being available as a Julia package but we encourage existing and new users to migrate to HiddenMarkovModels.jl which offers a similar interface. For more information see HiddenMarkovModels.jl: when did HMMs get so fast?. HMMBase provides a lightweight and efficient abstraction for hidden Markov models in Julia. Most HMMs libraries only support discrete (e.g. categorical) or Normal distributions. In contrast HMMBase builds upon Distributions.jl to support arbitrary univariate and multivariate distributions. -
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InteractiveErrors.jl
Interactive error messages for the Julia REPL
Interactive error messages for the Julia REPL. Just start using your REPL normally. Once you hit an error you'll be presented with an interactive tree representing your stacktrace which you can explore. To turn interactive errors off and return to using normal stack traces call toggle(). Call toggle() again to turn it back on. Press up and down arrows to move through the stacktrace. Press space to fold or unfold the currently selected line. A + will appear on folded lines. Press enter once finished. If you are on a line that references a particular file then that will present additional options in the next menu. q can be pressed to exit back to the REPL. -
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InvertibleNetworks.jl
A Julia framework for invertible neural networks
Building blocks for invertible neural networks in the Julia programming language. -
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Inviwo
Interactive Visualization Workshop
Inviwo is a modern, open-source visualization framework designed for interactive visual data analysis and scientific computing. Built in C++ with a modular, extensible architecture, Inviwo combines a visual editor (for creating data pipelines) with a powerful runtime engine that supports real-time rendering, interaction, and GPU-accelerated processing. It’s widely used in scientific domains for building and sharing visualizations of complex data such as medical imaging, simulations, and machine learning models. The platform supports both novice users through its graphical interface and advanced users through scripting and plugin development. -
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IterTools.jl
Common functional iterator patterns
Common functional iterator patterns. -
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Iterative Solvers
Iterative algorithms for solving linear systems, eigensystems
IterativeSolvers is a Julia package that provides iterative algorithms for solving linear systems, eigensystems, and singular value problems. -
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JUDI.jl
Julia Devito inversion
JUDI is a framework for large-scale seismic modeling and inversion and is designed to enable rapid translations of algorithms to fast and efficient code that scales to industry-size 3D problems. The focus of the package lies on seismic modeling as well as PDE-constrained optimization such as full-waveform inversion (FWI) and imaging (LS-RTM). Wave equations in JUDI are solved with Devito, a Python domain-specific language for automated finite-difference (FD) computations. JUDI's modeling operators can also be used as layers in (convolutional) neural networks to implement physics-augmented deep learning algorithms thanks to its implementation of ChainRules's rrule for the linear operators representing the discre wave equation. -
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Jupyter Notebook Viewer
A Jupyter notebook viewer for macOS
A native macOS application to view Jupyter/IPython notebooks. -
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Latexify.jl
Convert julia objects to LaTeX equations, arrays or other environments
This is a package for generating LaTeX maths from Julia objects. This package utilizes Julia's homoiconicity to convert expressions to LaTeX-formatted strings. Latexify.jl supplies functionalities for converting a range of different Julia objects. -
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MATLAB.jl
Calling MATLAB in Julia through MATLAB Engine
The MATLAB.jl package provides an interface for using MATLAB® from Julia using the MATLAB C api. In other words, this package allows users to call MATLAB functions within Julia, thus making it easy to interoperate with MATLAB from the Julia language. You cannot use MATLAB.jl without having purchased and installed a copy of MATLAB® from MathWorks. This package is available free of charge and in no way replaces or alters any functionality of MathWorks's MATLAB product. -
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MIRT.jl
MIRT: Michigan Image Reconstruction Toolbox (Julia version)
MIRT.jl is a collection of Julia functions for performing image reconstruction and solving related inverse problems. It is very much still under construction, although there are already enough tools to solve useful problems like compressed sensing MRI reconstruction. Trying the demos is a good way to get started. The documentation is even more still under construction. -
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Manopt.jl
Optimization on Manifolds in Julia
Optimization Algorithm on Riemannian Manifolds. A framework to implement arbitrary optimization algorithms on Riemannian Manifolds. Library of optimization algorithms on Riemannian manifolds. Easy-to-use interface for (debug) output and recording values during an algorithm run. Several tools to investigate the algorithms, gradients, and optimality criteria. -
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MarketData.jl
Time series market data
The MarketData package provides open-source financial data for research and testing. The data is from Quandl and is free end-of-day stock data. It is public domain without restrictions. The TimeSeries TimeArray data structure is used to store the data, but conversion to other data structures, including DataFrames and AxisArrays, is supported. -
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Mercury
Convert Python notebook to web app and share with non-technical users
Turn Python notebooks to web applications with open-source Mercury framework. Hide code and add interactive widgets. Non-technical users can tweak widgets and execute notebook with new parameters. The core of Mercury is Open Source under AGPLv3. We provide Mercury Pro with additional features, dedicated support and friendly commercial license. Mercury is a perfect tool to convert Python notebook to interactive web application and share with non-programmers. You define interactive widgets for your notebook with the YAML header. Your users can change the widgets values, execute the notebook and save result (as PDF or html file). You can hide your code to not scare your (non-coding) collaborators. Easily deploy to any server. Mercury is dual-licensed. Looking for dedicated support, a commercial-friendly license, and more features? The Mercury Pro is for you. -
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Metal.jl
Metal programming in Julia
With Metal.jl it's possible to program GPUs on macOS using the Metal programming framework. The package is a work in progress. There are bugs, functionality is missing, and performance hasn't been optimized. Expect to have to make changes to this package if you want to use it. PRs are very welcome. These requirements are fairly strict, and are due to our limited development resources (manpower, hardware). Technically, they can be relaxed. If you are interested in contributing to this, see this issue for more details. In practice, Metal.jl will probably work on any macOS 10.15+, and other GPUs that are supported by Metal might also function (if only partially), but such combinations are unsupported for now. -
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Metalhead.jl
Computer vision models for Flux
Metalhead.jl provides standard machine learning vision models for use with Flux.jl. The architectures in this package make use of pure Flux layers, and they represent the best practices for creating modules like residual blocks, inception blocks, etc. in Flux. Metalhead also provides some building blocks for more complex models in the Layers module. -
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MolecularGraph.jl
Graph-based molecule modeling toolkit for cheminformatics
MolecularGraph.jl is a graph-based molecule modeling and chemoinformatics analysis toolkit fully implemented in Julia. -
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MultivariatePolynomials.jl
Multivariate polynomials interface
MultivariatePolynomials.jl is an implementation-independent library for manipulating multivariate polynomials. It defines abstract types and an API for multivariate monomials, terms, and polynomials and gives default implementation for common operations on them using the API. On the one hand, This packages allows you to implement algorithms on multivariate polynomials that will be independant on the representation of the polynomial that will be chosen by the user. On the other hand, it allows the user to easily switch between different representations of polynomials to see which one is faster for the algorithm that he is using. -
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NLPModels.jl
Data Structures for Optimization Models
This package provides general guidelines to represent non-linear programming (NLP) problems in Julia and a standardized API to evaluate the functions and their derivatives. The main objective is to be able to rely on that API when designing optimization solvers in Julia. -
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ODBC.jl
An ODBC interface for the Julia programming language
The ODBC.jl package provides a Julia interface for the ODBC API as implemented by various ODBC driver managers. More specifically, it provides a prebuilt copy of iODBC and unixODBC for OSX/Linux platforms, while still relying on the system-provided libraries on Windows. This means that no extra installation of a driver manager is necessary after installing the ODBC.jl package. -
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OnlineStats.jl
Single-pass algorithms for statistics
OnlineStats does statistics and data visualization for big/streaming data via online algorithms. High-performance single-pass algorithms for statistics and data viz. Updated one observation at a time. Algorithms use O(1) memory. Algorithms use O(1) memory. -
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OpenCL.jl
OpenCL Julia bindings
Julia interface for the OpenCL parallel computation API. This package aims to be a complete solution for OpenCL programming in Julia, similar in scope to PyOpenCL for Python. It provides a high level API for OpenCL to make programing hardware accelerators, such as GPUs, FPGAs, and DSPs, as well as multicore CPUs much less onerous. -
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OpticSim.jl
Optical Simulation software
OpticSim.jl is a Julia package for geometric optics (ray tracing) simulation and optimization of complex optical systems developed by the Microsoft Research Interactive Media Group and the Microsoft Hardware Architecture Incubation Team (HART). It is designed to allow optical engineers to create optical systems procedurally and then to simulate and optimize them. Unlike Zemax, Code V, or other interactive optical design systems OpticSim.jl has limited support for interactivity, primarily in the tools for visualizing optical systems. A large variety of surface types are supported, and these can be composed into complex 3D objects through the use of constructive solid geometry (CSG). A complete catalog of optical materials is provided through the complementary GlassCat submodule. This software provides extensive control over the modelling, simulation, visualization and optimization of optical systems. It is especially suited for designs that have a procedural architecture. -
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PDMats.jl
Uniform Interface for positive definite matrices of various structures
Uniform interface for positive definite matrices of various structures. Positive definite matrices are widely used in machine learning and probabilistic modeling, especially in applications related to graph analysis and Gaussian models. It is not uncommon that positive definite matrices used in practice have special structures (e.g. diagonal), which can be exploited to accelerate computation. PDMats.jl supports efficient computation on positive definite matrices of various structures. In particular, it provides uniform interfaces to use positive definite matrices of various structures for writing generic algorithms, while ensuring that the most efficient implementation is used in actual computation.
