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A collection of scripts and functions for the analysis of atom probe tomography data. Currently, this includes: standard file operations, plotting mass spectra, mass spectra analysis and mass peak overlap solving.
For more information see the Wiki: https://sourceforge.net/p/atomprobelab/wiki/Home/
Quick overview video:
https://youtu.be/8rJHce7M5UU
More in-depth video using the APT school demos live script:
https://www.youtube.com/watch?v=cyrLHCzZwuw
For details of the maximum...
SPIW is a MATLAB toolbox, for automated processing of scanning probe microscope images. Tools are applicable to all SPM images, but the main focus is on images with atomic or molecular resolution.
SPIW is primarily a MATLAB toolbox with functions designed to be called in a user's own script. SPIW also has a very basic GUI for browsing and exporting images.
For information on SPIW's performance see our publication ( http://dx.doi.org/10.1063/1.4827076 ) in the Review of Scientific...
Matlab code to visualise brain graphs from connectivity matrices
This very configurable script allows you to plot a 3D (MNI space) visualisation of a brain graph, with edges represented by cylinders and vertices represented by spheres. To aid orientation, a cortical mesh can be added, as can convex hull outlines.
The colouring and sizing scheme is fully configurable for both edges and vertices.
You can see some example output in...
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