Showing 38 open source projects for "python file format interface"

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  • 1
    JDF.jl

    JDF.jl

    Julia DataFrames serialization format

    JDF is a DataFrames serialization format with the following goals, fast save and load times, compressed storage on disk, enabled disk-based data manipulation (not yet achieved), and support for machine learning workloads, e.g. mini-batch, sampling (not yet achieved). JDF stores a DataFrame in a folder with each column stored as a separate file. There is also a metadata.jls file that stores metadata about the original DataFrame. Collectively, the column files, the metadata file, and the folder...
    Downloads: 2 This Week
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  • 2
    UnROOT.jl

    UnROOT.jl

    Native Julia I/O package to work with CERN ROOT files objects

    UnROOT.jl is a reader for the CERN ROOT file format written entirely in Julia, without any dependence on ROOT or Python.
    Downloads: 0 This Week
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  • 3
    JLD2

    JLD2

    HDF5-compatible file format in pure Julia

    JLD2 saves and loads Julia data structures in a format comprising a subset of HDF5, without any dependency on the HDF5 C library. JLD2 is able to read most HDF5 files created by other HDF5 implementations supporting HDF5 File Format Specification Version 3.0 (i.e. libhdf5 1.10 or later) and similarly, those should be able to read the files that JLD2 produces. JLD2 provides read-only support for files created with the JLD package. The save and load functions, provided by FileIO, provide...
    Downloads: 0 This Week
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  • 4
    HDF5.jl

    HDF5.jl

    Save and load data in the HDF5 file format from Julia

    HDF5 stands for Hierarchical Data Format v5 and is closely modeled on file systems. In HDF5, a "group" is analogous to a directory, a "dataset" is like a file. HDF5 also uses "attributes" to associate metadata with a particular group or dataset. HDF5 uses ASCII names for these different objects, and objects can be accessed by Unix-like pathnames, e.g., "/sample1/tempsensor/firsttrial" for a top-level group "sample1", a subgroup "tempsensor", and a dataset "firsttrial". For simple types (scalars...
    Downloads: 0 This Week
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    libCEED

    libCEED

    CEED Library: Code for Efficient Extensible Discretizations

    libCEED provides fast algebra for element-based discretizations, designed for performance portability, run-time flexibility, and clean embedding in higher-level libraries and applications. It offers a C99 interface as well as bindings for Fortran, Python, Julia, and Rust. While our focus is on high-order finite elements, the approach is mostly algebraic and thus applicable to other discretizations in factored form, as explained in the user manual and API implementation portion...
    Downloads: 0 This Week
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  • 6
    Jmol

    Jmol

    An interactive viewer for three-dimensional chemical structures.

    Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other...
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    Downloads: 1,142 This Week
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  • 7
    123VCF

    123VCF

    An Intuitive and Efficient Tool for VCF file filtration

    123VCF has been developed to make the filtration step of VCF files efficient and more importantly easy to understand. It can be used in the most important step of whole exome/genome sequencing data analysis in the research and also clinical settings. User manual: https://dl.adbioinformatics.net/123VCF/123VCF_Manual.ver2.pdf If you use 123VCF, please cite its paper: Eidi, M., Abdolalizadeh, S., Moeini, S. et al. 123VCF: an intuitive and efficient tool for filtering VCF files. BMC...
    Downloads: 7 This Week
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  • 8
    Autoplot

    Autoplot

    Autoplot is an interactive browser for data on the web

    Autoplot is an interactive browser for data on the web. Give Autoplot a URL or local file name and it creates a sensible plot of the data. Autoplot allows you to interactively browse data stored in ascii, .cdf, netcdf, and many other formats. Autoplot's source has been moved to GitHub. Thanks to SourceForge for many years of hosting!
    Downloads: 4 This Week
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  • 9
    sadsa

    sadsa

    SADSA (Software Application for Data Science and Analytics)

    SADSA (Software Application for Data Science and Analytics) is a Python-based desktop application designed to simplify statistical analysis, machine learning, and data visualization for students, researchers, and data professionals. Built using Python for the GUI, SADSA provides a menu-driven interface for handling datasets, applying transformations, running advanced statistical tests, machine learning algorithms, and generating insightful plots — all without writing code.
    Downloads: 2 This Week
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  • 10
    SQLBucket

    SQLBucket

    Lightweight library to write, orchestrate and test your SQL ETL

    ... with the project_folder parameter. That folder will contain all your SQL ETL. The python file where you create your SQLBucket object is also a good place to instantiate your command line interface.
    Downloads: 0 This Week
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  • 11
    Wooey

    Wooey

    A Django app that creates automatic web UIs for Python scripts

    Wooey is a simple web interface to run command line Python scripts. Think of it as an easy way to get your scripts up on the web for routine data analysis, file processing, or anything else. The project was inspired by how simply and powerfully sandman could expose users to a database and by how Gooey turns ArgumentParser-based command-line scripts into WxWidgets GUIs. Originally two separate projects (Django-based djangui by Chris Mitchell and Flask-based Wooey by Martin Fitzpatrick) it has...
    Downloads: 0 This Week
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  • 12
    QuickPlot

    QuickPlot

    Simple user interface for gnuplot aimed for reflectometry data

    Graphical user interface for gnuplot to create publication quality figure very quickly. It supports templates for fast formatting of graphics, different plot styles, insets, axis and label options. One important feature is storing metadata in png and pdf files that can be used to reload any graph saved with QuickPlot.
    Downloads: 1 This Week
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  • 13
    AOFlagger

    AOFlagger

    RFI detector and quality analysis for astronomical radio observations

    The AOFlagger is a tool that can find and remove radio-frequency interference (RFI) in radio astronomical observations. The code has been highly optimized for speed and accuracy. It is used by default for the LOFAR radio telescope and thus is in productional stage. The software can run in a fully automated way, but a graphical interface is provided to analyse results and tweak the strategy. The preferred input file format is the Casa Measurement Set (MS) format. I believe that the AOFlagger...
    Downloads: 0 This Week
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  • 14
    Open Source Data Quality and Profiling

    Open Source Data Quality and Profiling

    World's first open source data quality & data preparation project

    This project is dedicated to open source data quality and data preparation solutions. Data Quality includes profiling, filtering, governance, similarity check, data enrichment alteration, real time alerting, basket analysis, bubble chart Warehouse validation, single customer view etc. defined by Strategy. This tool is developing high performance integrated data management platform which will seamlessly do Data Integration, Data Profiling, Data Quality, Data Preparation, Dummy Data...
    Downloads: 4 This Week
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  • 15
    Crystalsim -  XRD hkl simulation

    Crystalsim - XRD hkl simulation

    X-ray diffraction (XRD) analysis for hkl simulation of any crystal.

    Crystalsim is a simple freeware program with a neat graphical user interface for X-ray diffraction (XRD) data analysis . It can simulates all possible {hkl} planes data for the selected crystal. Crystallographic Information File (.cif) can also be used. Analyze both powder diffraction and single crystal data . Indexed at International Union of Crystallography (IUCR). Crystalline lattice parameters such as ‘a’, ‘b’, ‘c’ as well as interfacial angles such as alpha, beta, gamma...
    Downloads: 11 This Week
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  • 16
    NOVA

    NOVA

    Analysis and visualization of complexome profiling data.

    ..., image export, and automatic file format recognition support intuitive handling for biologists. Giese, et al. NOVA: a software to analyze complexome profiling data. Bioinformatics, 2015, 31(3): 440-441
    Downloads: 0 This Week
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  • 17
    NCVTK: A VTK-based tool to visualize data stored in the NetCDF file format.
    Downloads: 0 This Week
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  • 18
    SBML2LaTeX

    SBML2LaTeX

    A documentation and report generator for systems biological models

    SBML2LATEX is a tool to convert files in the System Biology Markup Language SBML) format into LATEX files. A convenient online version is available, which allows the user to directly generate report from SBML in form of PDF or TeX, which can be further processed to various file types including DVI, PS, EPS, GIF, JPG, or PNG. SBML2LATEX can also be downloaded and used locally in batch mode or interactively with its Graphical User Interface or several command line options. The purpose...
    Downloads: 2 This Week
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  • 19
    Visualization of Protein-Ligand Graphs

    Visualization of Protein-Ligand Graphs

    Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools

    NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/
    Downloads: 0 This Week
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  • 20

    ProBez

    Projections of Bezier curves

    Interface to manipulate with 3d gragic,s reading initial data fron an XML file, created by user which represents 3d model and saves data in vectorized format.
    Downloads: 0 This Week
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  • 21
    TeleScope

    TeleScope

    XML Data Stream Broker/Replicator

    ... query expressions. The platform features the pub-sub architecture and serves a set of simultaneously connected XML stream subscribers. The broker features Continuous Query engine over the XML stream. TeleScope provides the remote cli interface to login (in cisco fashion via telnet) and change/reset the query transaction on the current stream on the fly in real time. It also gives data query and subscribers statistics via a separate status port.
    Downloads: 0 This Week
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  • 22
    BGP Looking-glass

    BGP Looking-glass

    Open Source BGP Looking-glass

    ... events Splunk is supported. A JSON/Socket API is currently under development. Custom graphs can be easily implemented if taken the time to do so. There's certainly no need to rely on Splunk if one developed another way of displaying data. This project is meant to be nothing more than a route collector, and it's interface is solely CLI(command line interface). This project does not have graph data "out of the box".
    Downloads: 0 This Week
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  • 23
    Pumilio
    Pumilio is a web-based sound analysis and archive system for almost any kind of sound file with tools to see the spectrogram of the sound, select regions for further analysis and insertion in a database, filtering, and many other manipulations.
    Downloads: 0 This Week
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  • 24

    CollectD-CSV Plotter

    Web interface for visualizing CSV data from CollectD monitoring system

    CollectD-CSV Plotter is a web interface for fetching and visualizing data that is saved in CollectD CSV format. An HTML form is used for defining the time interval and choosing the wanted measurements. The plotter is actually a front-end for collectd-csv module (http://pypi.python.org/pypi/collectd-csv/), which it uses for fetching the data. Technologies CollectD-CSV Plotter uses include CGI/Python, HTML5/JavaScript, jQuery, jQuery-UI and Gnuplot.
    Downloads: 0 This Week
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  • 25
    Pear3DEngine

    Pear3DEngine

    Pear3DEngine is a modern and modular 3D development framework

    Pear3DEngine is a modern and modular 3D development framework that lets you create professional games, simulations and more. You are free to develop your program in C + +, XML or LUA and publish it as open source software or selling it as a commercial program. The rendering engine uses internally OpenGL or DirectX optionally. The planned editor supports software development on Linux, Windows and maybe MacOS X. DirectX 9 and therefore Windows XP are currently not supported and support is not...
    Downloads: 0 This Week
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