Search Results for "inference"
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Showing 24 open source projects for "inference"
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ReactiveMP.jl
High-performance reactive message-passing based Bayesian engine
ReactiveMP.jl is a Julia package that provides an efficient reactive message passing based Bayesian inference engine on a factor graph. The package is a part of the bigger and user-friendly ecosystem for automatic Bayesian inference called RxInfer. While ReactiveMP.jl exports only the inference engine, RxInfer provides convenient tools for model and inference constraints specification as well as routines for running efficient inference both for static and real-time datasets. -
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CausalInference.jl
Causal inference, graphical models and structure learning in Julia
Julia package for causal inference and analysis, graphical models and structure learning. This package contains code for the PC algorithm and the extended FCI algorithm, the score based greedy equivalence search (GES) algorithm, the Bayesian Causal Zig-Zag sampler and a function suite for adjustment set search. -
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CausalityTools.jl
Algorithms for detecting associations, dynamical influences
CausalityTools.jl is a package for quantifying associations and dynamical coupling between datasets, independence testing, and causal inference. Association measures from conventional statistics, information theory, and dynamical systems theory, for example, distance correlation, mutual information, transfer entropy, convergent cross mapping and a lot more. A dedicated API for independence testing, which comes with automatic compatibility with every measure-estimator combination you can think of. ... -
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Arize Phoenix
Uncover insights, surface problems, monitor, and fine tune your LLM
Phoenix provides ML insights at lightning speed with zero-config observability for model drift, performance, and data quality. Phoenix is an Open Source ML Observability library designed for the Notebook. The toolset is designed to ingest model inference data for LLMs, CV, NLP and tabular datasets. It allows Data Scientists to quickly visualize their model data, monitor performance, track down issues & insights, and easily export to improve. Deep Learning Models (CV, LLM, and Generative) are an amazing technology that will power many of future ML use cases. A large set of these technologies are being deployed into businesses (the real world) in what we consider a production setting. -
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Pandas Profiling
Create HTML profiling reports from pandas DataFrame objects
pandas-profiling generates profile reports from a pandas DataFrame. The pandas df.describe() function is handy yet a little basic for exploratory data analysis. pandas-profiling extends pandas DataFrame with df.profile_report(), which automatically generates a standardized univariate and multivariate report for data understanding. High correlation warnings, based on different correlation metrics (Spearman, Pearson, Kendall, Cramér’s V, Phik). Most common categories (uppercase, lowercase,... -
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ProbabilisticCircuits.jl
Probabilistic Circuits from the Juice library
This module provides a Julia implementation of Probabilistic Circuits (PCs), tools to learn structure and parameters of PCs from data, and tools to do tractable exact inference with them. Probabilistic Circuits provides a unifying framework for several family of tractable probabilistic models. PCs are represented as computational graphs that define a joint probability distribution as recursive mixtures (sum units) and factorizations (product units) of simpler distributions (input units). Given certain structural properties, PCs enable different range of tractable exact probabilistic queries such as computing marginals, conditionals, maximum a posteriori (MAP), and more advanced probabilistic queries. -
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JET.jl
An experimental code analyzer for Julia
JET employs Julia's type inference system to detect potential bugs and type instabilities. JET is tightly coupled to the Julia compiler, and so each JET release supports a limited range of Julia versions. See the Project.toml file for the range of supported Julia versions. The Julia package manager should install a version of JET compatible with the Julia version you are running. -
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DynamicHMC
Implementation of robust dynamic Hamiltonian Monte Carlo methods
...Derivatives can be provided manually, or using automatic differentiation. Consequently, this package requires that the user is comfortable with the basics of the theory of Bayesian inference, to the extent of coding a (log) posterior density in Julia. This approach allows the use of standard tools like profiling and benchmarking to optimize its performance. -
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Delta
A viewer for git and diff output
...Delta aims to make this both efficient and enjoyable: it allows you to make extensive changes to the layout and styling of diffs, as well as allowing you to stay arbitrarily close to the default git/diff output. Language syntax highlighting with color themes. Within-line highlights based on a Levenshtein edit inference algorithm. Git style strings (foreground color, background color, font attributes) are supported for >20 stylable elements. Delta provides Stylable box/line decorations to draw attention to commit, file and hunk header sections. Support for Git's color-moved feature. Code can be copied directly from the diff. n and N keybindings to move between files in large diffs, and between diffs in log -p views. ... -
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Lithops
A multi-cloud framework for big data analytics
...It abstracts cloud providers like IBM Cloud, AWS, Azure, and Google Cloud into a unified interface and turns your Python functions into scalable, event-driven workloads. Lithops is ideal for data processing, ML inference, and embarrassingly parallel workloads, giving you the power of FaaS (Function-as-a-Service) without vendor lock-in. It also supports hybrid cloud setups, object storage access, and simple integration with Jupyter notebooks. -
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Bayesian Optimization
Python implementation of global optimization with gaussian processes
This is a constrained global optimization package built upon bayesian inference and gaussian process, that attempts to find the maximum value of an unknown function in as few iterations as possible. This technique is particularly suited for optimization of high cost functions, situations where the balance between exploration and exploitation is important. More detailed information, other advanced features, and tips on usage/implementation can be found in the examples folder. -
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NVIDIA Merlin
Library providing end-to-end GPU-accelerated recommender systems
...The library enables data scientists, machine learning engineers, and researchers to build high-performing recommenders at scale. Merlin includes tools to address common feature engineering, training, and inference challenges. Each stage of the Merlin pipeline is optimized to support hundreds of terabytes of data, which is all accessible through easy-to-use APIs. For more information, see NVIDIA Merlin on the NVIDIA developer website. Transform data (ETL) for preprocessing and engineering features. Accelerate your existing training pipelines in TensorFlow, PyTorch, or FastAI by leveraging optimized, custom-built data loaders. ... -
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Sweetviz
Visualize and compare datasets, target values and associations
Sweetviz is an open-source Python library that generates beautiful, high-density visualizations to kickstart EDA (Exploratory Data Analysis) with just two lines of code. Output is a fully self-contained HTML application. The system is built around quickly visualizing target values and comparing datasets. Its goal is to help quick analysis of target characteristics, training vs testing data, and other such data characterization tasks. Shows how a target value (e.g. "Survived" in the Titanic... -
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SageMaker Inference Toolkit
Serve machine learning models within a Docker container
...You can use Amazon SageMaker to simplify the process of building, training, and deploying ML models. Once you have a trained model, you can include it in a Docker container that runs your inference code. A container provides an effectively isolated environment, ensuring a consistent runtime regardless of where the container is deployed. Containerizing your model and code enables fast and reliable deployment of your model. The SageMaker Inference Toolkit implements a model serving stack and can be easily added to any Docker container, making it deployable to SageMaker. ... -
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R packages (maintained by YJLEE)
R packages for PK/PD modeling , BE/BA, drug stability, ivivc, etc.
These R packages are developed for data analysis of PK/PD modeling & simulation, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM). -
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Bayesian Julia
Bayesian Statistics using Julia and Turing
Bayesian statistics is an approach to inferential statistics based on Bayes' theorem, where available knowledge about parameters in a statistical model is updated with the information in observed data. The background knowledge is expressed as a prior distribution and combined with observational data in the form of a likelihood function to determine the posterior distribution. The posterior can also be used for making predictions about future events. Bayesian statistics is a departure from... -
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DeepH-pack
Deep neural networks for density functional theory Hamiltonian
DeepH-pack is the official implementation of the DeepH (Deep Hamiltonian) method described in the paper Deep-learning density functional theory Hamiltonian for efficient ab initio electronic-structure calculation and in the Research Briefing. DeepH-pack supports DFT results made by ABACUS, OpenMX, FHI-aims or SIESTA and will support HONPAS. -
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AugmentedGaussianProcesses.jl
Gaussian Process package based on data augmentation, and sparsity
...It contains a collection of models for different gaussian and non-gaussian likelihoods, which are transformed via data augmentation into conditionally conjugate likelihood allowing for extremely fast inference via block coordinate updates. There are also more options to use more traditional variational inference via quadrature or Monte Carlo integration. -
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Soss
Probabilistic programming via source rewriting
Soss is a library for probabilistic programming. Soss and DynamicPPL are both maturing and becoming more complete, so the above will change over time. It's also worth noting that we (the Turing team and I) hope to move toward a natural way of using these systems together to arrive at the best of both. -
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Amazon SageMaker Examples
Jupyter notebooks that demonstrate how to build models using SageMaker
...It uses the familiar JupyterLab interface and has seamless integration with a variety of deep learning and data science environments and scalable compute resources for training, inference, and other ML operations. Studio offers teams and companies easy on-boarding for their team members, freeing them up from complex systems admin and security processes. Administrators control data access and resource provisioning for their users. Notebook Instances are another option. They have the familiar Jupyter and JuypterLab interfaces that work well for single users, or small teams where users are also administrators. ... -
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Data Science Specialization
Course materials for the Data Science Specialization on Coursera
...The repository is designed as a shared space for code examples, datasets, and instructional materials, helping learners follow along with lectures and assignments. It spans essential topics such as R programming, data cleaning, exploratory data analysis, statistical inference, regression models, machine learning, and practical data science projects. By providing centralized resources, the repo makes it easier for students to practice concepts and replicate examples from the curriculum. It also offers a structured view of how multiple disciplines—programming, statistics, and applied data analysis—come together in a professional workflow. -
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optPBN
An optimization toolbox for probabilistic Boolean networks
We introduce optPBN, a Matlab-based toolbox for the optimization of probabilistic Boolean networks (PBN) which operates under the framework of the BN/PBN toolbox from Shmulevich et al. optPBN offers an easy generation of probabilistic Boolean networks from Boolean rule-based modeling and allows for flexible measurement data integration from multiple experiments and a subsequent integrated optimization problem generation which then can be solved with different optimizers. Thereby optPBN allows for the identification of Boolean functions in the model from a given set of candidate Boolean rules which can be applied for network inference study. In addition, it also permits the determination of selection probabilities of Boolean rules in PBNs which can be further used to determine the influence of parent nodes in biochemical interactions. -
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A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).
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Implematation of robust depth-based inference tools for microarray data (a scale curve, to measure the dispersion of a set of curves, a rank test to decide if two groups of curves come from the same population, and classification techniques).
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