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Showing 3589 open source projects for "linux-debian"
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julia-vim
Vim support for Julia.
Vim support for Julia. This plug-in adds some functionality to substitute LaTeX code sequences (e.g. \alpha) with corresponding Unicode symbols (e.g. α). By default, these substitutions must be triggered explicitly by pressing the Tab key, as in the Julia command line (the REPL); however, an automatic, as-you-type mode can also be activated, and a method based on keymap is also available. This feature also works in command mode, e.g. when searching the files with the / or ? commands, but the... -
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SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.
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Free_Balistic
Input physical measures, calculate and show ballistic curve chart.
This application is intended to give abilities of calculating physical measures and draw charts, related to the aspect of the movement of sphere - shaped projectiles, ejected to reach some range. With the help of FreeBalistic you can fast calculate such measures as: height of bullet after specified time, height for given range, max height of bullet, range after given time, range to get max height, range to the end of move, time to get given range, time to get max height, time to get end of... -
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ARSystem plugins for Pentaho Kettle
AR-System step and db plugins for Pentaho Data Integration Kettle V5
Allows you to write per API to AR-System Server (BMC Remedy Action Request System). Includes two step output, one step input and one database plugin. The step plugins need the database plugin. -
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Alevin2
Tool for the evaluation of ALgorithms for Embedding VIrtual Networks
ALgorithms for Embedding VIrtual Networks Software to evaluate Virtual Network Embedding Algorithms. -
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JHotDraw is a two-dimensional graphics framework for structured drawing editors that is written in Java. It is based on Erich Gamma's JHotDraw, which is copyright 1996, 1997 by IFA Informatik and Erich Gamma.
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ComplexHeatmap
Make Complex Heatmaps
ComplexHeatmap is an R/Bioconductor package by Zuguang Gu et al. designed to create highly flexible, complex, richly annotated heatmaps and related visualizations. It allows arranging multiple heatmaps, adding annotations, combining heatmaps, customizing colors, layouts, and integrating other plots. Often used in genomics/bioinformatics to show expression, methylation, etc., with sidebars, annotations, clustering, etc. Highly customizable layout: combining different heatmaps, arranging and... -
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OCW Test - Out of Commerce Works
Program for out of commerce works detection
The OCW Test program has been designed to provide assistance in the detection of works outside trade, taking as reference a list of works from a specific bibliographic catalog. In this first version, the program operates on the identifiers of the books of the library of the Complutense University of Madrid. However, the program can be reedited, to work on any bibliographic catalog. -
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VividSTORM
Correlated confocal and SMLM data visualization and analysis
VividSTORM is a free and open-source standalone software with graphical user interface, for the correlated visualization and analysis of superresolution single molecule localization microscopy (SMLM) molecule lists and conventional pixel intensity-based images. The localization points (LPs) within this ROI can be analyzed using the selected built-in functions. NOTE: If you encounter issues not addressed by the user guide, please contact by message on this site or via e-mail for... -
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pyspread
Python spreadsheet application
Pyspread is a non-traditional spreadsheet application that is based on and written in the programming language Python. The goal of pyspread is to be the most pythonic spreadsheet. Pyspread expects Python expressions in its grid cells, which makes a spreadsheet specific language obsolete. Each cell returns a Python object that can be accessed from other cells. These objects can represent anything including lists or matrices. Dependencies + Python (>=2.7, <3.0) + numpy... -
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CloverDX
Design, automate, operate and publish data pipelines at scale
Please, visit www.cloverdx.com for latest product versions. Data integration platform; can be used to transform/map/manipulate data in batch and near-realtime modes. Suppors various input/output formats (CSV,FIXLEN,Excel,XML,JSON,Parquet, Avro,EDI/X12,HL7,COBOL,LOTUS, etc.). Connects to RDBMS/JMS/Kafka/SOAP/Rest/LDAP/S3/HTTP/FTP/ZIP/TAR. CloverDX offers 100+ specialized components which can be further extended by creation of "macros" - subgraphs - and libraries, shareable with 3rd... -
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MaRC (Map Reprojections and Conversions) is a C++ library and program designed to produce map projections of bodies thay may be represented as oblate spheroids from digital images (e.g. FITS images) or computed values (e.g. incidence and emission angles).
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PivotTable.js
Open-source Javascript Pivot Table
PivotTable.js is a powerful JS library (originally CoffeeScript) that brings Excel-style pivot tables to the browser. Built atop jQuery and jQueryUI, it allows users to drag and drop fields into rows, columns, and aggregators to slice and summarize datasets. It also integrates with Python and R via modules like pivottablejs, making it versatile for data analysis across platforms. -
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An easy to use application to design your kitchen garden or your house farm. Helps you plan your plants ( vegetables, fruit trees, herbs, flowers ) so that it respects the rules of crop rotation and companion planting. Based on square foot gardening. Requires Java 8.
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apache spark data pipeline osDQ
osDQ dedicated to create apache spark based data pipeline using JSON
This is an offshoot project of open source data quality (osDQ) project https://sourceforge.net/projects/dataquality/ This sub project will create apache spark based data pipeline where JSON based metadata (file) will be used to run data processing , data pipeline , data quality and data preparation and data modeling features for big data. This uses java API of apache spark. It can run in local mode also. Get json example at https://github.com/arrahtech/osdq-spark How to... -
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MarDRe
MapReduce-based tool to remove duplicate DNA reads
MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems.... -
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HSRA
Hadoop spliced read aligner for RNA-seq data
HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a... -
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X10
Performance and Productivity at Scale
X10 is a class-based, strongly-typed, garbage-collected, object-oriented language. To support concurrency and distribution, X10 uses the Asynchronous Partitioned Global Address Space programming model (APGAS). This model introduces two key concepts -- places and asynchronous tasks -- and a few mechanisms for coordination. With these, APGAS can express both regular and irregular parallelism, message-passing-style and active-message-style computations, fork-join and bulk-synchronous... -
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DocOpt.jl
Command line arguments parser
DocOpt.jl is a port of docopt written in the Julia language. docopt generates a command-line arguments parser from human-readable usage patterns. The DocOpt module exports just one function, docopt, which takes multiple arguments but all of them except the first one are optional. -
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The SourceForge OpenRasMol project is an adjunct to the RasMol and OpenrasMol project at http://rasmol.org. It is hoped that the SourceForge OpenRasMol project will provide a convenient focal point for active collaborative contributions.
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A graphical tool to design a bicycle (s) geometry and derive drawings from its configuration rattleCAD moved to www.rattleCAD.com
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Radiance
Highly accurate ray-tracing software system for UNIX computers
Radiance is a free, highly accurate ray-tracing software system for UNIX computers. It is a suite of programs designed for the analysis and visualization of lighting in design. Radiance is superior to simpler lighting calculation and rendering tools in that there are no limitations on the geometry or the materials that may be simulated. Scene geometry, materials, luminaires, time, date and sky conditions (for daylight calculations) are specified; spectral radiance (ie. luminance +... -
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CapAnalysis
PCAP from another point of view
CapAnalysis is a web visual tool for information security specialists, system administrators and everyone who needs to analyze large amounts of captured network traffic. Analyze TCP and UDP streams Support multible datasets Perform deep packet inspection Support filtering capability Source Code: https://github.com/xplico/CapAnalysis -
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Central Proteomics Facilities Pipeline
A data analysis pipeline for shotgun mass-spectrometry proteomics.
CPFP provides a pipeline for the analysis of MS/MS proteomic data, targeted at the needs of central proteomics facilities. == Project Status - Updated January 3rd 2019 == CPFP has not been actively developed since 2014, when I left the proteomics group at UTSW. To access up-to-date algorithms for the analysis of proteomics data, other tools would now be preferred. However: * Limited fixes have been made on the main master branch by Phil Charles at the University of Oxford. * As... -
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GMOL
A tool for 3D genome structure visualization
GMOL is an application designed to visualize genome structure in 3D. It allows users to view the genome structure at multiple scales, including: global, chromosome, loci, fiber, nucleosome, and nucleotide. This software was built upon the pre-existing Jmol package by Prof. Cheng's group. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project...
